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Theses


2013

Priyanka Banerjee.
An Algorithmic Approach to Peptidomimetics.
Master's thesis,
Masters Programme in Life Science Informatics Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Germany. (HITS).

2012

Thomas Monninger.
Dynamische hybride Cloud für wissenschaftliche Anwendungen.
Master's thesis, Fakultaet fuer Mathematik und Informatik Ruprecht-Karls University, Heidelberg, Germany. (HITS).

2011

Sundar Raman Subramaniam.
Sequence, Structure and Stability of Collagen and its Interaction with Collagenase.
PhD thesis, University of Madras, Chennai., India. (Visiting Ph. D. Student (DAAD Sandwich Scholar) to HITS from Central Leather Research Institute (CLRI)).

Divita Garg.
Computational and NMR Studies of Thymidylate Synthase and its Regulation., (2011)
PhD thesis, Faculty of Chemistry, Technical University of Munich, Germany. (HITS)(TUM) .

Nadine Veith.
Structural Comparison of Pyruvate Kinase.
Master's thesis, Faculty of Biosciences, Ruprecht-Karls University Heidelberg, Germany. (HITS).

Erika Nerini.
System Approach to the Identification of Folate-related Enzyme Inhibitors with Anti-infectious Action., (2011)
PhD thesis, Doctoral School of Science and Technologies for Health Products, University of Modena and Reggio Emilia, Italy. (Visiting Phd Student to HITS from University of Modena).


2010

Anna Feldman-Salit.
Computation and Modeling of Molecular Recognition: The Cysteine Synthase Complex., (2010)
PhD thesis, Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University of Heidelberg, Germany. (HITS).


2009

Georgi V. Pachov.
Linker Histone-Nucleosome Interactions: A Modelling and Simulation Study., (2009)
PhD thesis, Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University,Heidelberg, Germany. (HITS).

Mykhaylo Berynskyy.
Automatisierte Analyse von Brownian Dynamics Simulationen.
Master's thesis, Bioinformatics, Giessen-Friedberg University of Applied Sciences, Germany. (HITS).


2007

Domantas Motiejunas.
Modeling of macromolecular interactions.
PhD thesis, Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University, Heidelberg, Germany. (HITS).


2006

Mai Zahran.
Analyse a haut debit des proprietes electrostatiques des proteines de la famille des ubiquitines (High-throughput analysis of the electrostatic properties of proteins of the ubiquitin family). , (2006)
Master's thesis, Bioinformatics, University Paris VII, France. (HITS).


2005

Tim I. Johann.
Perturbation Methods in Molecular Dynamics Simulations with Implicit Solvent Models., (2005)
Diplom thesis, Physics, Ruperto-Carola University,Heidelberg, Germany. (HITS).

Stefan Ulbrich.
The Protein Structure Annotation Tool ProSAT2.
Studienarbeit, Computer Science, University of Karlsruhe, Germany . (HITS).

Bruno Besson.
Development of a software to aid the search of protein structural information to estimate kinetic parameters in systems biology applications. , (2005)
Master's thesis, Bioinformatics and Modeling, National Institute of Applied Science (INSA) Lyon, France. (HITS).


2004

Domantas Motiejunas.
Protein-protein docking assisted by sequence conservation and experimental data., (2004)
Master's thesis, Molecular Biology, Ruperto-Carola University,Heidelberg, Germany. (HITS).

Henrik R.Hallingbaeck.
Peroxidases: A computational study of ligand binding and enzyme kinetics., (2004)
Master's thesis, Molecular Biotechnology, Uppsala University School of Engineering, Uppsala, Sweden. (HITS).


2003

Gunter F. Neumann.
Entwicklung einer erweiterten Anwendung der Hauptkomponentenanalyse fuer das Protein-Protein Dockingproblem., (2003)
Diplom thesis, Physics, Ruperto-Carola University,Heidelberg, Germany. (EML).

Octave M. Noubibou Doudieu.
Using Sequence Information in Protein Docking Procedures.
Master's thesis, Bioinformatics, University of Applied Sciences Berlin, Germany. (EML).

James N.D. Battey.
High-throughput Structural and Electrostatic Modelling of Ubiquitin Conjugating Enzymes., (2003)
Master's thesis, Bioinformatics, Exeter University, Exeter, United Kingdom. (EMBL).

Lakshmi V. Padmavathi Pulagam.
Structure-based design of inhibitors of enzymes of the ubiquitin mediated protein degradation pathway., (2003)
Master's thesis, Bioinformatics, Cologne University Bioinformatics Center, University of Cologne, Germany. (EMBL).


2001

Aitor Gonzalez.
Glycolytic Pathway Reaction Animations.
Diplom thesis, Biology, Ruperto-Carola University,Heidelberg Germany. (EML/EMBL).

Stefania Ferrari.
Inhibition studies of enzymes involved in drug resistance phenomena. Library-design and Structure-based approaches towards species-specific inhibitors of Thymidylate Synthase. , (2001)
PhD thesis, University of Modena and Reggio Emilia, Modena, Italy, . (Visiting Ph.D. student to EMBL from University of Modena).


1999

Frederico Nardi.
Molecular Dynamics and NMR Spectroscopic Studies of Local Interactions of Small Peptides in Aqueous Solution Involving Aromatic Residues. , (1999)
PhD thesis, Universite Joseph Fourier, Grenoble, France. (EMBL).

Francesca De Rienzo.
Computational studies of blue copper proteins.
PhD thesis, University of Modena and Reggio Emilia, Modena, Italy . (Visiting Ph.D. student to EMBL from University of Modena).

Masakazu Koboyashi.
Chloride ion exchange routes in Haloalkane Dehalogenase from Xanthobacter autrophicus detected by Thermal Motion Pathway analysis, GRID and Essential Dynamics. , (1999)
Master's thesis, University of York, United Kingdom. (EMBL).

Ralph Gauges.
Molekulardynamische Simulation zur Aufklaerung des Substratzuganges in Cytochrom P450eryF., (1999)
Diplom thesis, Biology, Eberhard-Karls University, Tubingen, Germany, . (EMBL).


1998

Wolfgang Bitomsky.
Binding of Glycosaminoglycans to Heparin-Binding Proteins.
PhD thesis, University of Vienna, Austria. (Visiting Ph.D. student to EMBL from University of Vienna).


1996

Niels Reimer.
Dynamische Einstellung des Parallelitaetsgrades mit reflexiven Programmen., (1996)
Diplom thesis, Computer Science, University of Karlsruhe, Tubingen, Germany. (EMBL).

Angel Ramirez Ortiz.
Rational design of Human Synovial Fluid Phospholipase A2 inhibitors and analysis of their three-dimensional structure-activity relationships. , (1996)
PhD thesis, University of Alcala de Henares, Madrid, Spain. (EMBL).

Volkhard Helms.
Hydratation des aktiven Zentrums von Cytochrom P450cam - Untersuchung mit Molekueldynamik-Simulationen., (1996)
PhD thesis, Ludwig-Maximilians University, Munich, Germany. (EMBL).


1995

Michael Degenhardt.
De-Novo Design von Liganden zur Blockierung der Substratzugaenlichkeit von Cytochrom P450cam., (1995)
Diplom thesis, Biology, Ruperto-Carola University, Heidelberg, Germany. (EMBL).

 
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