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Tel.: +49 (0)6221 – 533 – 269
Fax: +49 (0)6221 – 533 – 298
Firstname.Lastname@h-its.org
  • since 2013 PreDoc in the Molecular and Cellular Modeling (MCM) group at HITS
  • Member in HGS MathComp since 2014
  • Master of Science in Bioinformatics at the LMU & TU Munich (2010-2012)
  • Bachelor of Science in Bioinformatics at the LMU & TU Munich (2007-2010)

 

Research Interests
  • Analyzing Protein Structures and Interactions
    • Apply Brownian Dynamics for Simulating Protein Domain Interactions
    • Calculate Druggability of Transient Protein Binding Pockets
    • Ligand Docking with Druggable Transient Pockets
  • Electrostatic Potential Analyses
  • Bioinformatics Software and Web development (with e.g. Java and Python)

 

Teaching and Supervision Experiences
  • Assistance in ‘Grundkurs Bioinformatik’ at the ZMBH (2014, 2015, 2016)
  • Supervision of Internship: Anke Heit, ‘Modelling of Histone deacetylase 6 and 10’, (2014)
  • Supervision of Internship: Max Horn, ‘Clustering of whole protein pocket shapes to enable druggability calculation’, (2015)
  • Bachelor Thesis Supervision: Max Horn, ‘Clustering and Scoring the Druggability of Transient Protein Pockets’, (2015)

 

Selected Talks, Posters, and Conferences

Antonia Stank (Talk)
A combinatorial puzzle: Modelling disaggregase co-chaperone complexes, DKFZ-ZMBH Alliance Young Scientists Seminar Series, January 2016, Heidelberg

Antonia Stank, Jonathan C. Fuller, Michael Martinez, Stefan Henrich, Stefan Richter and Rebecca C. Wade (Poster)
LigDig: a web server for querying ligand–protein interactions, International Conference on Systems Biology (ICSB), November 2015, Singapore

Antonia Stank (Talk)
A combinatorial puzzle: Modelling disaggregase co-chaperone complexes, Molecular Graphics and Modelling Society (MGMS) conference, November 2015, Singapore

Antonia Stank, Rebecca C. Wade (Poster)
Computational studies on the relation between macromolecular dynamics and protein binding and function, EMBO practical course, “Biomolecular simulation”, Paris, France, July 20-27, 2014

Antonia Stank (Talk)
Modeling the domain interactions of Hsp40 proteins, DKFZ-ZMBH Alliance Retreat, Kloster Schöntal, Germany, July 16-18, 2014

Mykhaylo Berynskyy, Antonia Stank, Rebecca C. Wade (Poster)
Modeling the interactions and structural dynamics of chaperone protein, Third Biological Diffusion and Brownian Dynamics Brainstorm, Heidelberg, Germany, October 7-9, 2013.

 

Publications

ResearchGate profile

Antonia Stank, Stefan Richter and Rebecca C. Wade
ProSAT+: visualizing sequence annotations on 3D structure.
PEDS (2016), DOI:10.1093/protein/gzw021, (Fulltext).

Antonia Stank, Daria B. Kokh, Jonathan C. Fuller and Rebecca C. Wade
Protein Binding Pocket Dynamics.
Acc. Chem. Res. (2016), DOI: 10.1021/acs.accounts.5b00516, (Fulltext).

Nadinath B. Nillegoda, Janine Kirstein, Anna Szlachcic, Mykhaylo Berynskyy, Antonia Stank, Florian Stengel, Kristin Arnsburg, Xuechao Gao, Annika Scior, Ruedi Aebersold, D. Lys Guilbride, Rebecca C. Wade, Richard I. Morimoto, Matthias P. Mayer and Bernd Bukau
Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation.
Nature, (2015) 524, 247–251 (Fulltext).

Jonathan C. Fuller, Michael Martinez, Stefan Henrich, Antonia Stank, Stefan Richter and Rebecca C. Wade.
LigDig: a web server for querying ligand-protein interactions.
Bioinformatics, (2015) 31(7):1147-1149. (Fulltext).

Sweety Mathew, Susanne Krug, Thomas Skurk, Anna Halama, Antonia Stank, Anna Artati, Cornelia Prehn, Joel A Malek, Gabi Kastenmüller, Werner Römisch-Margl, Jerzy Adamski, Hans Hauner and Karsten Suhre.
Metabolomics of Ramadan fasting: an opportunity for the controlled study of physiological responses to food intake.
Journal of Translational Medicine, (2014) 12(1):161