{"id":41978,"date":"2020-04-14T11:18:47","date_gmt":"2020-04-14T09:18:47","guid":{"rendered":"https:\/\/www.h-its.org\/de\/?post_type=hits-project&#038;p=41978"},"modified":"2024-02-14T17:21:54","modified_gmt":"2024-02-14T16:21:54","slug":"deepcurate-deutsch","status":"publish","type":"hits-project","link":"https:\/\/www.h-its.org\/de\/projects\/deepcurate-deutsch\/","title":{"rendered":"DeepCurate"},"content":{"rendered":"\n<p> <strong>A Framework for Semi-Automatic Bio-Curation for the SABIO-RK Database<\/strong> <\/p>\n\n\n\n<p> In DeepCurate, a framework is to be developed that supports human  experts in the curation of biomedical databases &#8211; i.e. in the transfer  of life science research results from the specialist literature into a  structured, machine-readable form. The starting point is the  state-of-the-art workflow developed in the <a href=\"https:\/\/www.h-its.org\/projects\/sabio-rk-biochemical-reaction-kinetics-database\/\">SABIO-RK project<\/a>.  While maintaining or improving the quality of the curated data, the  system should reduce the cognitive load on the experts, automate trivial  subtasks (such as search) and thereby increase the effectiveness and  efficiency of manual curation. DeepCurate uses deep learning methods for  which text, image and eye movement data are integrated for the first  time. <\/p>\n\n\n\n<p> Experimental data from biochemical reactions and their reaction kinetic  properties are of great importance for research and development in the  fields of biotechnology, medical treatment methods or diagnostics. Most  of this data is published in conventional specialist literature, where  it is optimized for human reading and is not or only weakly structured (e.g. in tabular form). Presently existing methods of automatic language processing (NLP) do not yet have the robustness, coverage and  effectiveness to extract this data in the required quality. In order to  make the data available in biomedical databases, the current practice in  the Bio-DB community is the completely manual extraction and curation  by human experts. <a href=\"http:\/\/sabio.h-its.org\/\">SABIO-RK<\/a> is a curated database on biochemical reactions and their reaction kinetic properties. <\/p>\n\n\n\n<p> DeepCurate is a collaborative project between the <a href=\"https:\/\/www.h-its.org\/research\/nlp\/\">NLP<\/a> and <a href=\"https:\/\/www.h-its.org\/research\/sdbv\/\">SDBV<\/a> groups at HITS as part of the <a href=\"https:\/\/www.h-its.org\/research\/hits-lab\">HITS Lab initiative<\/a>. The project is funded by BMBF for three years starting in January 2020.<\/p>\n","protected":false},"author":24,"featured_media":44234,"template":"","hits-research-group":[1304],"hits-project-category":[1396],"class_list":["post-41978","hits-project","type-hits-project","status-publish","has-post-thumbnail","hentry","hits-research-group-sdbv-de","hits-project-category-previous-projects-de"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>DeepCurate - HITS gGmbH<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.h-its.org\/de\/projects\/deepcurate-deutsch\/\" \/>\n<meta property=\"og:locale\" content=\"de_DE\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"DeepCurate - HITS gGmbH\" \/>\n<meta property=\"og:description\" content=\"A Framework for Semi-Automatic Bio-Curation for the SABIO-RK Database In DeepCurate, a framework is to be developed that supports human experts ...\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.h-its.org\/de\/projects\/deepcurate-deutsch\/\" \/>\n<meta property=\"og:site_name\" content=\"HITS gGmbH\" \/>\n<meta property=\"article:modified_time\" content=\"2024-02-14T16:21:54+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.h-its.org\/de\/wp-content\/uploads\/sites\/2\/2021\/06\/Deep_Curate_Image.png\" \/>\n\t<meta property=\"og:image:width\" content=\"939\" \/>\n\t<meta property=\"og:image:height\" content=\"800\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Gesch\u00e4tzte Lesezeit\" \/>\n\t<meta name=\"twitter:data1\" content=\"2\u00a0Minuten\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/www.h-its.org\\\/de\\\/projects\\\/deepcurate-deutsch\\\/\",\"url\":\"https:\\\/\\\/www.h-its.org\\\/de\\\/projects\\\/deepcurate-deutsch\\\/\",\"name\":\"DeepCurate - 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