{"id":4749,"date":"2014-10-09T11:04:45","date_gmt":"2014-10-09T09:04:45","guid":{"rendered":"http:\/\/www.h-its.org\/?page_id=4749"},"modified":"2020-04-02T11:54:41","modified_gmt":"2020-04-02T09:54:41","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.h-its.org\/de\/forschung\/sdbv\/publications\/","title":{"rendered":"Publikationen"},"content":{"rendered":"\n  <div class=\"hits-blocks hits-publications-block\">\n\n      <div class=\"hits-tabs\">\n        <nav>\n          <ul>\n                          <li class=\"is-active\"><a href=\"#\" >Publikationen<\/a><\/li>\n                                              <\/ul>\n        <\/nav>\n        <div class=\"content\">\n                      <div class=\"hits-tabs--tab\">\n            \n              <\/ul><h2 id=\"publication-year-2026\">2026<\/h2><ul class=\"publications-list\"><li>Westerhoff HV, Bakker BM, Bommarius AS, Cardenas ML, Cornish-Bowden A, Fitzpatrick P, Halling PJ, Hatzimanikatis V, Kettner C, Liu Y, McDonald AG, Noor E, Pleiss J, Raushel FM, Rohwer JM, Schnell S, Tipton KF, Tsai MD, Stockar Uv, Wittig U, Wohlgemuth R, Woodley JM (2026). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41787601\"><span class=\"publication-title\">Metabolic thermodynamics: pertinent reference state and energy potentials.<\/span><\/a>, FEBS J. 2026 Mar 5. doi: 10.1111\/febs.70415. <span style=\"color:#ddd; font-size:12px\">2242<\/span><\/li><li>Wood V, Jeffryes M, Green AF, Blum M, Orchard S, Panni S, Quaglia F, Rodriguez-Esteban R, Seager J, Tosatto SCE, Wittig U, Harrison M (2026). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41695260\"><span class=\"publication-title\">Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation.<\/span><\/a>, Bioinform Adv. 2026 Jan 27;6(1):vbag028. doi: 10.1093\/bioadv\/vbag028. eCollection  2026. <span style=\"color:#ddd; font-size:12px\">2219<\/span><\/li><\/ul><h2 id=\"publication-year-2025\">2025<\/h2><ul class=\"publications-list\"><li>Chadwick E, Brouwer M, Schneider K, Arend D, Bacall F, Bardet E, Beier S, Brilhaus D, Hu X, Pardonche ELR, M\u00fchlhaus T, Owen S, Pommier C, Weil HL (2025). <a href=\"https:\/\/doi.org\/10.37044\/osf.io\/zah28_v1\"><span class=\"publication-title\">BioHackEU25 report: Towards a Robust Validation Service for Data and Metadata in ARC RO-Crates<\/span><\/a>, osf.io\/zah28_v1,[Preprint] <span style=\"color:#ddd; font-size:12px\">2130<\/span><\/li><li>Zhang Y, Kurtz A, Zhao H, Wang L, Hao J, Golebiewski M, Stacey GN, Zhao T (2025). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41136854\"><span class=\"publication-title\">Development of Stem Cell Data Systems and Associated Data Standards for Cell Therapy.<\/span><\/a>, Adv Exp Med Biol. 2025;1486:363-374. doi: 10.1007\/978-3-031-97297-3_28. <span style=\"color:#ddd; font-size:12px\">2117<\/span><\/li><li>Kasbohm E, Inau ET, Zeleke AA, Shiferaw KB, Abaza H, Clemens V, Golebiewski M, Gonzalez-Ocanto M, Klopfenstein SAI, Vorisek CN, Waltemath D, Schmidt CO (2025). <a href=\"https:\/\/doi.org\/10.1101\/2025.09.26.25336637\"><span class=\"publication-title\">Lessons learned from evaluating the NFDI4Health metadata schema for health studies using the Research Data Alliance\u2019s FAIR data maturity model<\/span><\/a>, Preprint. https:\/\/doi.org\/10.1101\/2025.09.26.25336637 <span style=\"color:#ddd; font-size:12px\">2173<\/span><\/li><li>Alper P, D&#8217;Anna F, Droesbeke B, Andrabi M, Buono RA, Bianchini F, B\u00f6sl K, Chandramouliswaran I, Cook M, Faria D, Fatima N, Hooft R, Jareborg N, Jetten M, Pilvar D, Poires-Oliveira G, Popleteeva M, Portell-Silva L, Slifka J, Such\u00e1nek M, Gelder Cv, Welter D, Wittig U, Coppens F, Goble C (2025). <a href=\"https:\/\/doi.org\/10.1016\/j.patter.2025.101345\"><span class=\"publication-title\">RDMkit: A research data management toolkit for life sciences<\/span><\/a>, Patterns:101345 <span style=\"color:#ddd; font-size:12px\">2087<\/span><\/li><li>Abaza H, Shutsko A, Klopfenstein SAI, Vorisek CN, Schmidt CO, Brunings-Kuppe C, Clemens V, Darms J, Hanss S, Intemann T, Jannasch F, Kasbohm E, Lindstadt B, Lobe M, Nimptsch K, Nothlings U, Ocanto MG, Osei TB, Perrar I, Peters M, Pischon T, Sax U, Schulze MB, Schwarz F, Schwedhelm C, Thun S, Waltemath D, Zeleke AA, Muller W, Golebiewski M (2025). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40397930\"><span class=\"publication-title\">Toward a Domain-Overarching Metadata Schema for Making Health Research Studies FAIR (Findable, Accessible, Interoperable, and Reusable): Development of the NFDI4Health Metadata Schema.<\/span><\/a>, JMIR Med Inform. 2025 May 21;13:e63906. doi: 10.2196\/63906. <span style=\"color:#ddd; font-size:12px\">2072<\/span><\/li><li>Meineke F, Hu X, Golebiewski M, L\u00f6be M (2025). <a href=\"https:\/\/doi.org\/10.3233\/shti250461\"><span class=\"publication-title\">Roll-Out of the NFDI4health Local Data Hubs for Medical Research Data Management<\/span><\/a>, In: Intelligent Health Systems \u2013 From Technology to Data and Knowledge. IOS Press <span style=\"color:#ddd; font-size:12px\">2177<\/span><\/li><li>Mertov\u00e1 L, Polreich S, Lewkovski O, M\u00fcller W (2025). <a href=\"https:\/\/doi.org\/10.1145\/3677389.3702599\"><span class=\"publication-title\">The BeeProject: Advanced Digitisation and Creation of a Dataset for the Monitoring of Beehives<\/span><\/a>, Lukr\u00e9cia Mertov\u00e1, Severin Polreich, Oleg Lewkowski, and Wolfgang M\u00fcller. 2024. The BeeProject: Advanced Digitisation and Creation of a Dataset for the Monitoring of Beehives. In The 2024 ACM\/IEEE Joint Conference on Digital Libraries (JCDL \u201924), December 16\u201320, 2024, Hong Kong, China. ACM, New York, NY, USA, 11 pages. https:\/\/doi.org\/10.1145\/3677389.3702599 <span style=\"color:#ddd; font-size:12px\">2017<\/span><\/li><li>Beier S, Arend D, Bauer D, Brandizi M, Brilhaus D, Chadwick E, Clemens V, Crusoe MR, Feser M, Grieb J, Hu X, Miller A, M\u00fchlhaus T, Owen S, Rey M, Schneider G, Schneider J, Schneider K, Weil HL, Wetzels F (2025). <a href=\"https:\/\/doi.org\/10.37044\/osf.io\/x9d6b_v1\"><span class=\"publication-title\">BioHackEU24 report: Creating user benefit from ARC-ISA RO-Crate machine-actionability &amp; Increasing FAIRness of digital agrosystem resources by extending Bioschemas<\/span><\/a>, osf.io\/x9d6b_v1,[Preprint] <span style=\"color:#ddd; font-size:12px\">2008<\/span><\/li><li>Golebiewski M, Mayer G (2025). <a href=\"https:\/\/doi.org\/10.1016\/b978-0-323-95502-7.00164-0\"><span class=\"publication-title\">Data Formats for Systems Biology, Systems Medicine and Computational Modeling<\/span><\/a>, In: Encyclopedia of Bioinformatics and Computational Biology. Elsevier, pp 321-333 <span style=\"color:#ddd; font-size:12px\">2041<\/span><\/li><li>Hu X, Owen S, Meineke F, Bacall F, Goble C, M\u00fcller W, Golebiewski M (2025). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.16736322\"><span class=\"publication-title\">Flexible Metadata Structuring for Research Data Management Through the FAIRDOM-SEEK Platform &#8211; Implementing Tailored and Complex Metadata Schemes in SEEK<\/span><\/a>, Zenodo. https:\/\/zenodo.org\/doi\/10.5281\/zenodo.16736322. <span style=\"color:#ddd; font-size:12px\">2137<\/span><\/li><li>Fluck J, Darms J, Golebiewski M, Schmidt CO, Vorisek CN, L\u00f6be M, Sax U, Pigeot I (2025). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.16736285\"><span class=\"publication-title\">Challenges and opportunities of integrating NFDI4Health into the European Health Data Space<\/span><\/a>, Zenodo. https:\/\/zenodo.org\/doi\/10.5281\/zenodo.16736285. <span style=\"color:#ddd; font-size:12px\">2172<\/span><\/li><li>L\u00f6be M, Golebiewski M, Sax U (2025). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.16736359\"><span class=\"publication-title\">Profiling W3C DCAT for use in specific domains &#8211; Experience with the HealthDCAT-AP draft standard for the European Health Data Space (EHDS)<\/span><\/a>, Zenodo. https:\/\/zenodo.org\/doi\/10.5281\/zenodo.16736359. <span style=\"color:#ddd; font-size:12px\">2176<\/span><\/li><li>Vorisek CN, H\u00f6lter T, Sa\u00df J, Shutsko A, Kasbohm E, Golebiewski M, Schmidt CO, Thun S, Klopfenstein S (2025). <a href=\"https:\/\/doi.org\/10.3205\/25gmds110\"><span class=\"publication-title\">Standardizing Metadata in NFDI4Health: A FHIR Implementation Guide for Interdisciplinary Health Research<\/span><\/a>, German Medical Science GMS Publishing House. https:\/\/conferences.publisso.de\/en\/conferences\/gmds2025\/25gmds110. <span style=\"color:#ddd; font-size:12px\">2178<\/span><\/li><li>Meineke F, Golebiewski M, Hu X, H\u00e4nsel R, Abedi M, M\u00fcller W, L\u00f6be M (2025). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.16735781\"><span class=\"publication-title\">Rollout of the NFDI4Health Local Data Hubs &#8211; First Results from Call 2024\/25<\/span><\/a>, Zenodo. https:\/\/zenodo.org\/doi\/10.5281\/zenodo.16735781. <span style=\"color:#ddd; font-size:12px\">2194<\/span><\/li><\/ul><h2 id=\"publication-year-2024\">2024<\/h2><ul class=\"publications-list\"><li>Hu X, Abaza H, H\u00e4nsel R, Abedi M, Golebiewski M, M\u00fcller W, Meineke F (2024). <a href=\"https:\/\/doi.org\/10.3233\/shti240845\"><span class=\"publication-title\">NFDI4Health Local Data Hubs Implementing a Tailored Metadata Schema for Health Data<\/span><\/a>, German Medical Data Sciences 2024,IOS Press <span style=\"color:#ddd; font-size:12px\">1869<\/span><\/li><li>Elwes MR, Troglio A, Abedi M, Golebiewski M, Meineke F, Kirsten T, Namer B, Beyan O, Kutafina E (2024). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39234705\"><span class=\"publication-title\">Semi-Automatic Export of Electrophysiological Metadata to NFDI4Health Local Data Hubs: Use Case of Microneurography odML-Tables &#8211; A Technical Case Report.<\/span><\/a>, Stud Health Technol Inform. 2024 Aug 30;317:40-48. doi: 10.3233\/SHTI240836. <span style=\"color:#ddd; font-size:12px\">2074<\/span><\/li><li>L\u00f6be M, Hu X, Klopfenstein SA (2024). <a href=\"https:\/\/doi.org\/10.3233\/SHTI240676\"><span class=\"publication-title\">Using Health IT Standards to Facilitate Metadata Exchange Between Research Data Management Systems<\/span><\/a>, Digital Health and Informatics Innovations for Sustainable Health Care Systems,IOS Press <span style=\"color:#ddd; font-size:12px\">1861<\/span><\/li><li>Vorisek CN, Klopfenstein SAI, Lobe M, Schmidt CO, Mayer PJ, Golebiewski M, Thun S (2024). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39003329\"><span class=\"publication-title\">Towards an Interoperability Landscape for a National Research Data Infrastructure for Personal Health Data.<\/span><\/a>, Sci Data. 2024 Jul 13;11(1):772. doi: 10.1038\/s41597-024-03615-3. <span style=\"color:#ddd; font-size:12px\">2046<\/span><\/li><li>Pigeot I, Ahrens W, Darms J, Fluck J, Golebiewski M, Hahn HK, Hu X, Intemann T, Kasbohm E, Kirsten T, Klammt S, Klopfenstein SAI, Lassen-Schmidt B, Peters M, Sax U, Waltemath D, Schmidt CO (2024). <a href=\"https:\/\/doi.org\/10.1007\/s13222-024-00477-2\"><span class=\"publication-title\">Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19<\/span><\/a>, Datenbank Spektrum 24(2):117-128 <span style=\"color:#ddd; font-size:12px\">1862<\/span><\/li><li>Golebiewski M, Bader G, Gleeson P, Gorochowski TE, Keating SM, Konig M, Myers CJ, Nickerson DP, Sommer B, Waltemath D, Schreiber F (2024). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39026464\"><span class=\"publication-title\">Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.<\/span><\/a>, J Integr Bioinform. 2024 Jul 22;21(1):20240015. doi: 10.1515\/jib-2024-0015.  eCollection 2024 Mar 1. <span style=\"color:#ddd; font-size:12px\">2043<\/span><\/li><li>Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie ME, Funahashi A, Acencio ML, Hemedan A, Aichem M, Klein K, Czauderna T, Burtscher F, Yamada TG, Hiki Y, Hiroi NF, Hu F, Pham N, Ehrhart F, Willighagen EL, Valdeolivas A, Dugourd A, Messina F, Esteban-Medina M, Pena-Chilet M, Rian K, Soliman S, Aghamiri SS, Puniya BL, Naldi A, Helikar T, Singh V, Fernandez MF, Bermudez V, Tsirvouli E, Montagud A, Noel V, Ponce-de-Leon M, Maier D, Bauch A, Gyori BM, Bachman JA, Luna A, Pinero J, Furlong LI, Balaur I, Rougny A, Jarosz Y, Overall RW, Phair R, Perfetto L, Matthews L, Rex DAB, Orlic-Milacic M, Gomez LCM, Meulder BD, Ravel JM, Jassal B, Satagopam V, Wu G, Golebiewski M, Gawron P, Calzone L, Beckmann JS, Evelo CT, D&#8217;Eustachio P, Schreiber F, Saez-Rodriguez J, Dopazo J, Kuiper M, Valencia A, Wolkenhauer O, Kitano H, Barillot E, Auffray C, Balling R, Schneider R (2024). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38414974\"><span class=\"publication-title\">Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.<\/span><\/a>, Front Immunol. 2024 Feb 13;14:1282859. doi: 10.3389\/fimmu.2023.1282859.  eCollection 2023. <span style=\"color:#ddd; font-size:12px\">2042<\/span><\/li><li>Arend D, Conte AD, Feser M, Gadiya Y, Gaignard A, Castro LJ, Mi\u010deti\u0107 I, Moretti S, Neumann S, Rayya N, Tsueng G, Willighagen E, Wittig U (2024). <a href=\"https:\/\/doi.org\/10.37044\/osf.io\/yxunp\"><span class=\"publication-title\">Bioschemas Resource Index for Chem and Plants<\/span><\/a>, osf.io\/yxunp,[Preprint] <span style=\"color:#ddd; font-size:12px\">1777<\/span><\/li><li>Klopfenstein SAI, Sass J, Vorisek CN, Jorczik F, Schmidt CO, Lobe M, Golebiewski M, Abaza H, Thun S (2024). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38269757\"><span class=\"publication-title\">Bringing Communities Together: Mapping the Investigation-Study-Assay-Model (ISA) to Fast Healthcare Interoperability Resources (FHIR).<\/span><\/a>, Stud Health Technol Inform. 2024 Jan 25;310:18-22. doi: 10.3233\/SHTI230919. <span style=\"color:#ddd; font-size:12px\">2044<\/span><\/li><li>Golebiewski GMM (2024). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.10492796\"><span class=\"publication-title\">Standardization landscape, needs and gaps for the virtual human twin (VHT)<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1817<\/span><\/li><li>Golebiewski GMM (2024). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.10524795\"><span class=\"publication-title\">EDITH standards implementation guide (IG)<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1818<\/span><\/li><li>D&#8217;Anna F, Jareborg N, Jetten M, Ahokas M, Alper P, Andrews R, B\u00f6sl K, D\u2019Altri T, Faria D, Fatima N, Fuchs S, Garrard C, Gu W, Heil KF, Kallberg Y, Licciulli F, L\u00fcbke N, Melo AMP, Mi\u010deti\u0107 I, Oliveira J, Oulas A, Palagi PM, Poterlowicz K, Perez-Sitja X, Ruch P, Sansone S, Schnitzer H, Gelder Cv, Vergoulis T, Wibberg D, Wittig U, Lesko\u0161ek B, Vondrasek J, Andrabi M (2024). <a href=\"https:\/\/doi.org\/10.12688\/f1000research.146301.1\"><span class=\"publication-title\">A research data management (RDM) community for ELIXIR<\/span><\/a>, F1000Res 13:230 <span style=\"color:#ddd; font-size:12px\">1829<\/span><\/li><\/ul><h2 id=\"publication-year-2023\">2023<\/h2><ul class=\"publications-list\"><li>Abaza H, Shutsko A, Golebiewski M, Klopfenstein S, Schmidt CO, Vorisek C, Br\u00fcnings-Kuppe C, Clemens V, Darms J, Han\u00df S, Intemann T, Jannasch F, Kasbohm E, Lindst\u00e4dt B, L\u00f6be M, Orban E, Perrar I, Peters M, Sax U, Schulze M, Schupp C, Schwarz F, Schwedhelm C, Strathmann S, Waltemath D, W\u00fcnsche H, Zeleke A (2023). <a href=\"https:\/\/doi.org\/10.4126\/FRL01-006472531\"><span class=\"publication-title\">The NFDI4Health Metadata Schema (V3_3)<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1780<\/span><\/li><li>Linciano P, Quotadamo A, Luciani R, Santucci M, Zorn KM, Foil DH, Lane TR, Silva ACd, Santarem N, Moraes CB, Freitas-Junior L, Wittig U, Mueller W, Tonelli M, Ferrari S, Venturelli A, Gul S, Kuzikov M, Ellinger B, Reinshagen J, Ekins S, Costi MP (2023). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37921561\"><span class=\"publication-title\">High-Throughput Phenotypic Screening and Machine Learning Methods Enabled the Selection of Broad-Spectrum Low-Toxicity Antitrypanosomatidic Agents.<\/span><\/a>, J Med Chem. 2023 Nov 3. doi: 10.1021\/acs.jmedchem.3c01322. <span style=\"color:#ddd; font-size:12px\">1734<\/span><\/li><li>Fluck J, Golebiewski M, Darms J (2023). <a href=\"https:\/\/doi.org\/10.52825\/cordi.v1i.392\"><span class=\"publication-title\">Data Publication for Personalised Health Data<\/span><\/a>, Proc Conf Res Data Infrastr 1 <span style=\"color:#ddd; font-size:12px\">1796<\/span><\/li><li>Meineke F, Golebiewski M, Hu X, Kirsten T, L\u00f6be M, Klammt S, Sax U, M\u00fcller W (2023). <a href=\"https:\/\/doi.org\/10.52825\/cordi.v1i.375\"><span class=\"publication-title\">NFDI4Health Local Data Hubs for Finding and Accessing Health Data<\/span><\/a>, Proc Conf Res Data Infrastr 1 <span style=\"color:#ddd; font-size:12px\">1797<\/span><\/li><li>Sax U, Henke C, Dr\u00e4ger C, Bender T, Kuntz A, Golebiewski M, Ulrich H, L\u00f6be M (2023). <a href=\"https:\/\/doi.org\/10.52825\/cordi.v1i.347\"><span class=\"publication-title\">Provenance Core Data Set: A Minimal Information Model for Data Provenance in Biomedical Research<\/span><\/a>, Proc Conf Res Data Infrastr 1 <span style=\"color:#ddd; font-size:12px\">1837<\/span><\/li><li>Abaza H, Shutsko A, Golebiewski M, Klopfenstein S, Schmidt CO, Vorisek C, COVID-19 NTF, NFDI4Health , Br\u00fcnings-Kuppe C, Clemens V, Darms J, Han\u00df S, Intemann T, Jannasch F, Kasbohm E, Lindst\u00e4dt B, L\u00f6be M, Orban E, Perrar I, Peters M, Sax U, Schulze M, Schupp C, Schwarz F, Schwedhelm C, Strathmann S, Waltemath D, W\u00fcnsche H, Zeleke A (2023). <a href=\"https:\/\/doi.org\/10.4126\/FRL01-006453422\"><span class=\"publication-title\">Metadata schema of the NFDI4Health and the NFDI4Health Task Force COVID-19 (V3_2)<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1779<\/span><\/li><li>Golebiewski GMM (2023). <a href=\"https:\/\/doi.org\/10.5281\/zenodo.8200955\"><span class=\"publication-title\">First Draft of the VHT Roadmap<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1821<\/span><\/li><li>Kirschner M, Golebiewski M, Moser H, consortium E, 5 I2 (2023). <a href=\"https:\/\/www.iso.org\/standard\/83516.html\"><span class=\"publication-title\">ISO\/TS 9491-1:2023 Biotechnology \u2014 Predictive computational models in personalized medicine research \u2014 Part 1: Constructing, verifying and validating models<\/span><\/a>, ISO\/TS 9491-1:2023 Biotechnology \u2014 Predictive computational models in personalized medicine research \u2014 Part 1: Constructing, verifying and validating models. 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German:72-85. https:\/\/doi.org\/10.17192\/bfdm.2021.2.8331. <span style=\"color:#ddd; font-size:12px\">1670<\/span><\/li><li>Schmidt CO, Darms J, Shutsko A, Lobe M, Nagrani R, Seifert B, Lindstadt B, Golebiewski M, Koleva S, Bender T, Bauer CR, Sax U, Hu X, Lieser M, Junker V, Klopfenstein S, Zeleke A, Waltemath D, Pigeot I, Fluck J (2021). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34042687\"><span class=\"publication-title\">Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies.<\/span><\/a>, Stud Health Technol Inform. 2021 May 27;281:794-798. doi: 10.3233\/SHTI210284. <span style=\"color:#ddd; font-size:12px\">1277<\/span><\/li><li>Schmiester L, Schalte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Frohlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Muller W, Pathirana D, Raimundez E, Refisch L, Rosenblatt M, Stapor PL, Stadter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D (2021). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33497393\"><span class=\"publication-title\">PEtab-Interoperable specification of parameter estimation problems in systems biology.<\/span><\/a>, PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371\/journal.pcbi.1008646.  eCollection 2021 Jan. <span style=\"color:#ddd; font-size:12px\">1449<\/span><\/li><li>Rey M, Weidemann A, Wittig U, Dudas D, Ghosh S, Golebiewski M, Hu X, M\u00fcller W (2021). <a href=\"https:\/\/doi.org\/10.4119\/unibi\/2950259\"><span class=\"publication-title\">FAST, ADAPTED, CURATED FAIR DATA FOR COVID-19 RESEARCH<\/span><\/a> <span style=\"color:#ddd; font-size:12px\">1212<\/span><\/li><\/ul><h2 id=\"publication-year-2020\">2020<\/h2><ul class=\"publications-list\"><li>Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frischman G, G\u00f3mez LCM, Somers J, Hoch M, Gupta SK, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Leon MPd, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dr\u00e4ger A, Renz A, Naveez M, Bocskei Z, Messina F, B\u00f6rnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker J, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Haw R, Jassal B, Matthews L, Orlic-Milacic M, Ribeiro AS, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel J, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grou\u00e8s V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, Waard Ad, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban-Medina M, Pe\u00f1a-Chilet M, Helikar T, Puniya BL, Modos D, Treveil A, Olbei M, Meulder BD, Dugourd A, Naldi A, Noel V, Calzone L, Sander C, Demir E, Korcsmaros T, Freeman TC, Aug\u00e9 F, Beckmann JS, Hasenauer J, Wolkenhauer O, Wilighagen EL, Pico AR, Evelo CT, Gillespie ME, Stein LD, Hermjakob H, D\u2019Eustachio P, Saez-Rodriguez J, Dopazo J, Valencia A, Kitano H, Barillot E, Auffray C, Balling R, Schneider R (2020). <a href=\"https:\/\/doi.org\/10.1101\/2020.10.26.356014\"><span class=\"publication-title\">COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms<\/span><\/a>, biorxiv;2020.10.26.356014v1,[Preprint] <span style=\"color:#ddd; font-size:12px\">1211<\/span><\/li><li>Waltemath D, Golebiewski M, Blinov ML, Gleeson P, Hermjakob H, Hucka M, Inau ET, Keating SM, K\u00f6nig M, Krebs O, Malik-Sheriff RS, Nickerson D, Oberortner E, Sauro HM, Schreiber F, Smith L, Stefan MI, Wittig U, Myers CJ (2020). <a href=\"https:\/\/doi.org\/10.1515\/jib-2020-0005\"><span class=\"publication-title\">The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)<\/span><\/a>, Journal of Integrative Bioinformatics 17(2-3),20200005 <span style=\"color:#ddd; font-size:12px\">1175<\/span><\/li><li>Keating SM, Waltemath D, K\u00f6nig M, Zhang F, Dr\u00e4ger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik\u2010Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, G\u00f3mez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier\u2010Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M, Adams RR, Allen NA, Angermann BR, Antoniotti M, Bader GD, \u010cerven\u00fd J, Courtot M, Cox CD, Pezze PD, Demir E, Denney WS, Dharuri H, Dorier J, Drasdo D, Ebrahim A, Eichner J, Elf J, Endler L, Evelo CT, Flamm C, Fleming RM, Fr\u00f6hlich M, Glont M, Gon\u00e7alves E, Golebiewski M, Grabski H, Gutteridge A, Hachmeister D, Harris LA, Heavner BD, Henkel R, Hlavacek WS, Hu B, Hyduke DR, Jong H, Juty N, Karp PD, Karr JR, Kell DB, Keller R, Kiselev I, Klamt S, Klipp E, Kn\u00fcpfer C, Kolpakov F, Krause F, Kutmon M, Laibe C, Lawless C, Li L, Loew LM, Machne R, Matsuoka Y, Mendes P, Mi H, Mittag F, Monteiro PT, Natarajan KN, Nielsen PM, Nguyen T, Palmisano A, Pettit J, Pfau T, Phair RD, Radivoyevitch T, Rohwer JM, Ruebenacker OA, Saez\u2010Rodriguez J, Scharm M, Schmidt H, Schreiber F, Schubert M, Schulte R, Sealfon SC, Smallbone K, Soliman S, Stefan MI, Sullivan DP, Takahashi K, Teusink B, Tolnay D, Vazirabad I, Kamp A, Wittig U, Wrzodek C, Wrzodek F, Xenarios I, Zhukova A, Zucker J (2020). <a href=\"https:\/\/doi.org\/10.15252\/msb.20199110\"><span class=\"publication-title\">SBML\n              Level 3: an extensible format for the exchange and reuse of biological models<\/span><\/a>, Mol Syst Biol 16(8) <span style=\"color:#ddd; font-size:12px\">1178<\/span><\/li><li>Brunak S, Collin CB, Cathaoir KE\u00d3, Golebiewski M, Kirschner M, Kockum I, Moser H, Waltemath D (2020). <a href=\"https:\/\/doi.org\/10.1515\/jib-2020-0006\"><span class=\"publication-title\">Towards standardization guidelines for in silico approaches in personalized medicine<\/span><\/a>, Journal of Integrative Bioinformatics 17(2-3) <span style=\"color:#ddd; font-size:12px\">1210<\/span><\/li><li>Schreiber F, Sommer B, Czauderna T, Golebiewski M, Gorochowski TE, Hucka M, Keating SM, K\u00f6nig M, Myers C, Nickerson D, Waltemath D (2020). <a href=\"https:\/\/doi.org\/10.1515\/jib-2020-0022\"><span class=\"publication-title\">Specifications of standards in systems and synthetic biology: status and developments in 2020<\/span><\/a>, Journal of Integrative Bioinformatics 17(2-3) <span style=\"color:#ddd; font-size:12px\">1213<\/span><\/li><li>Group RCW (2020). <a href=\"https:\/\/doi.org\/10.15497\/RDA00052\"><span class=\"publication-title\">RDA COVID-19 Recommendations and Guidelines<\/span><\/a>, RDA COVID-19 Working Group. 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font-size:12px\">1072<\/span><\/li><li>Stanford NJ, Scharm M, Dobson PD, Golebiewski M, Hucka M, Kothamachu VB, Nickerson D, Owen S, Pahle J, Wittig U, Waltemath D, Goble C, Mendes P, Snoep J (2019). <a href=\"https:\/\/doi.org\/10.1007\/978-1-4939-9736-7_17\"><span class=\"publication-title\">Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices<\/span><\/a>, Yeast Systems Biology 2049:285-314,Springer New York <span style=\"color:#ddd; font-size:12px\">489<\/span><\/li><li>Golebiewski M (2019). <a href=\"https:\/\/doi.org\/10.1016\/B978-0-12-809633-8.20471-8\"><span class=\"publication-title\">Data Formats for Systems Biology and Quantitative Modeling<\/span><\/a>, Encyclopedia of Bioinformatics and Computational Biology,pp.884-893,Elsevier <span style=\"color:#ddd; font-size:12px\">1070<\/span><\/li><li>Wibberg D, Batut B, Belmann P, Blom J, Gl\u00f6ckner FO, Gr\u00fcning B, Hoffmann N, Kleinb\u00f6lting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O (2019). <a href=\"https:\/\/doi.org\/10.12688\/f1000research.20244.1\"><span class=\"publication-title\">The de.NBI \/ ELIXIR-DE training platform &#8211; 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font-size:12px\">1347<\/span><\/li><li>Wittig U, Rey M, Weidemann A, M\u00fcller W (2017). <a href=\"https:\/\/doi.org\/10.1016\/j.jbiotec.2017.06.007\"><span class=\"publication-title\">Data management and data enrichment for systems biology projects<\/span><\/a>, Journal of Biotechnology 261:229-237 <span style=\"color:#ddd; font-size:12px\">1177<\/span><\/li><li>M\u00fcller W, Bittkowski M, Golebiewski M, Kania R, Rey M, Weidemann A, Wittig U (2017). <a href=\"https:\/\/doi.org\/10.1007\/s13222-016-0243-4\"><span class=\"publication-title\">SABIO-RK, von Daten in der Publikation zur Suchl\u00f6sung f\u00fcr\u00a0Spezialisten<\/span><\/a>, Datenbank Spektrum 17(1):21-28 <span style=\"color:#ddd; font-size:12px\">1346<\/span><\/li><li>Wolstencroft K, Krebs O, Snoep JL, Stanford NJ, Bacall F, Golebiewski M, Kuzyakiv R, Nguyen Q, Owen S, Soiland-Reyes S, Straszewski J, van\u00a0Niekerk DD, Williams AR, Malmstr\u00f6m L, Rinn B, M\u00fcller W, Goble C (2017). <a href=\"https:\/\/doi.org\/10.1093\/nar\/gkw1032\"><span class=\"publication-title\">FAIRDOMHub: a repository and collaboration environment for sharing systems biology research<\/span><\/a>, Nucleic Acids Res 45(D1):D404-D407 <span style=\"color:#ddd; font-size:12px\">9<\/span><\/li><\/ul><h2 id=\"publication-year-2016\">2016<\/h2><ul class=\"publications-list\"><li>Zakhartsev M, Medvedeva I, Orlov Y, Akberdin I, Krebs O, Schulze WX (2016). <a href=\"https:\/\/doi.org\/10.1186\/s12870-016-0868-3\"><span class=\"publication-title\">Metabolic model of central carbon and energy metabolisms of growing Arabidopsis thaliana in relation to sucrose translocation<\/span><\/a>, BMC Plant Biol 16(1) <span style=\"color:#ddd; font-size:12px\">29<\/span><\/li><li>Tour\u00e9 V, Mazein A, Waltemath D, Balaur I, Saqi M, Henkel R, Pellet J, Auffray C (2016). <a href=\"https:\/\/doi.org\/10.1186\/s12859-016-1394-x\"><span class=\"publication-title\">STON: exploring biological pathways using the SBGN standard and graph databases.<\/span><\/a>, BMC Bioinformatics 17(1) <span style=\"color:#ddd; font-size:12px\">202<\/span><\/li><li>Henkel R, Hoehndorf R, Kacprowski T, Kn\u00fcpfer C, Liebermeister W, Waltemath D (2016). <a href=\"https:\/\/doi.org\/10.1093\/bib\/bbw090\"><span class=\"publication-title\">Notions of similarity for systems biology models.<\/span><\/a>, Brief Bioinform:bbw090 <span style=\"color:#ddd; font-size:12px\">198<\/span><\/li><li>Nickerson D, Atalag K, Bono Bd, Geiger J, Goble C, Hollmann S, Lonien J, M\u00fcller W, Regierer B, Stanford NJ, Golebiewski M, Hunter P (2016). <a href=\"https:\/\/doi.org\/10.1098\/rsfs.2015.0103\"><span class=\"publication-title\">The Human Physiome: how standards, software, and innovative service infrastructures are providing the building blocks to make it achievable.<\/span><\/a>, Interface Focus 6(2):20150103 <span style=\"color:#ddd; font-size:12px\">200<\/span><\/li><li>Regierer B, Hollmann S, Golebiewski M (2016). <a href=\"https:\/\/doi.org\/10.14806\/ej.21.A.813\"><span class=\"publication-title\">NORM-SYS &#8211; harmonizing standardization processes for model and data exchange in systems biology<\/span><\/a>, EMBnet j. 21(A):813 <span style=\"color:#ddd; font-size:12px\">1348<\/span><\/li><li>Krebs O, Wolstencroft K, Stanford N, Morrison N, Golebiewski M, Owen S, Nguyen Q, Snoep J, M\u00fcller W, Goble C (2016). <span class=\"publication-title\">FAIRDOM approach for semantic interoperability of systems biology data and models.<\/span>, Proceedings International Conference on Biomedical Ontology, ICBO 2015. no. CEUR Workshop Proceedings 1515\r  <span style=\"color:#ddd; font-size:12px\">199<\/span><\/li><li>Schreiber F, Bader G, Gleeson P, Golebiewski M, Hucka M, Le N, Myers C, Nickerson D, Sommer B, Waltemath D (2016). <a href=\"https:\/\/doi.org\/10.2390\/biecoll-jib-2016-289\"><span class=\"publication-title\">Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016<\/span><\/a>, Journal of Integrative Bioinformatics (2016) , 13:289 <span style=\"color:#ddd; font-size:12px\">201<\/span><\/li><\/ul><h2 id=\"publication-year-2015\">2015<\/h2><ul class=\"publications-list\"><li>Stanford NJ, Wolstencroft K, Golebiewski M, Kania R, Juty N, Tomlinson C, Owen S, Butcher S, Hermjakob H, Nov\u00e8re NL, Mueller W, Snoep J, Goble C (2015). <a href=\"https:\/\/doi.org\/10.15252\/msb.20156053\"><span class=\"publication-title\">The evolution of standards and data management practices in systems biology<\/span><\/a>, Mol Syst Biol 11(12):851 <span style=\"color:#ddd; font-size:12px\">7<\/span><\/li><li>Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C (2015). <a href=\"https:\/\/doi.org\/10.1186\/s12918-015-0174-y\"><span class=\"publication-title\">SEEK: a systems biology data and model management platform<\/span><\/a>, BMC Syst Biol 9(1) <span style=\"color:#ddd; font-size:12px\">60<\/span><\/li><li>Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C (2015). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26160520\"><span class=\"publication-title\">SEEK: a systems biology data and model management platform.<\/span><\/a>, BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186\/s12918-015-0174-y. <span style=\"color:#ddd; font-size:12px\">12<\/span><\/li><li>Schreiber F, Bader GD, Golebiewski M, Hucka M, Kormeier B, Nov\u00e8re NL, Myers C, Nickerson D, Sommer B, Waltemath D, Weise S (2015). <a href=\"https:\/\/doi.org\/10.1515\/jib-2015-258\"><span class=\"publication-title\">Specifications of Standards in Systems and Synthetic Biology<\/span><\/a>, Journal of Integrative Bioinformatics 12(2):1-3 <span style=\"color:#ddd; font-size:12px\">488<\/span><\/li><li>Hucka M, Nickerson DP, Bader G, Bergmann FT, Cooper J, Demir E, Garny A, Golebiewski M, Myers CJ, Schreiber F, Waltemath D, Nov\u00e8re NL (2015). <a href=\"https:\/\/doi.org\/10.3389\/fbioe.2015.00019\"><span class=\"publication-title\">Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative<\/span><\/a>, Front. Bioeng. Biotechnol. 3 <span style=\"color:#ddd; font-size:12px\">1126<\/span><\/li><\/ul><h2 id=\"publication-year-2014\">2014<\/h2><ul class=\"publications-list\"><li>Bergmann FT, Adams R, Moodie S, Cooper J, Glont M, Golebiewski M, Hucka M, Laibe C, Miller AK, Nickerson DP, Olivier BG, Rodriguez N, Sauro HM, Scharm M, Soiland-Reyes S, Waltemath D, Yvon F, Nov\u00e8re NL (2014). <a href=\"https:\/\/doi.org\/10.1186\/s12859-014-0369-z\"><span class=\"publication-title\">COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project<\/span><\/a>, BMC Bioinformatics 15(1),369 <span style=\"color:#ddd; font-size:12px\">1349<\/span><\/li><li>Wittig U, Kania R, Bittkowski M, Wetsch E, Shi L, Jong L, Golebiewski M, Rey M, Weidemann A, Rojas I, M\u00fcller W (2014). <a href=\"https:\/\/doi.org\/10.1016\/j.pisc.2014.02.004\"><span class=\"publication-title\">Data extraction for the reaction kinetics database SABIO-RK<\/span><\/a>, Perspectives in Science 1(1-6):33-40 <span style=\"color:#ddd; font-size:12px\">10<\/span><\/li><li>Waltemath D, Bergmann FT, Chaouiya C, Czauderna T, Gleeson P, Goble C, Golebiewski M, Hucka M, Juty N, Krebs O, Nov\u00e8re NL, Mi H, Moraru II, Myers CJ, Nickerson D, Olivier BG, Rodriguez N, Schreiber F, Smith L, Zhang F, Bonnet E (2014). <a href=\"https:\/\/doi.org\/10.4056\/sigs.5279417\"><span class=\"publication-title\">Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)<\/span><\/a>, Stand. Genomic Sci. 9(3):1285-1301 <span style=\"color:#ddd; font-size:12px\">1350<\/span><\/li><\/ul><h2 id=\"publication-year-2013\">2013<\/h2><ul class=\"publications-list\"><li>B\u00fcchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, Iersel Mv, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, M\u00fcller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Dr\u00e4ger A, Nov\u00e8re NL (2013). <a href=\"https:\/\/doi.org\/10.1186\/1752-0509-7-116\"><span class=\"publication-title\">Path2Models: large-scale generation of computational models from biochemical pathway maps<\/span><\/a>, BMC Syst Biol 7(1),116 <span style=\"color:#ddd; font-size:12px\">1351<\/span><\/li><li>Wittig U, Rey M, Kania R, Bittkowski M, Shi L, Golebiewski M, Weidemann A, Muller W, Rojas I (2013). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24165050\"><span class=\"publication-title\">Challenges for an enzymatic reaction kinetics database.<\/span><\/a>, FEBS J. 2014 Jan;281(2):572-82. doi: 10.1111\/febs.12562. Epub 2013 Oct 25. <span style=\"color:#ddd; font-size:12px\">11<\/span><\/li><li>Shi L, Jong L, Wittig U, Lucarelli P, Stepath M, Mueller S, D&#8217;Alessandro LA, Klingmuller U, Muller W (2013). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23549603\"><span class=\"publication-title\">Excemplify: a flexible template based solution, parsing and managing data in spreadsheets for experimentalists.<\/span><\/a>, J Integr Bioinform. 2013 Apr 3;10(2):220. doi: 10.2390\/biecoll-jib-2013-220. <span style=\"color:#ddd; font-size:12px\">26<\/span><\/li><\/ul><h2 id=\"publication-year-2011\">2011<\/h2><ul class=\"publications-list\"><li>Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, Algaa E, Weidemann A, Sauer-Danzwith H, Mir S, Krebs O, Bittkowski M, Wetsch E, Rojas I, Muller W (2011). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22102587\"><span class=\"publication-title\">SABIO-RK&#8211;database for biochemical reaction kinetics.<\/span><\/a>, Nucleic Acids Res. 2012 Jan;40(Database issue):D790-6. doi: 10.1093\/nar\/gkr1046.  Epub 2011 Nov 18. <span style=\"color:#ddd; font-size:12px\">8<\/span><\/li><li>M\u00fcller W, Rojas I, Eberhart A, Haase P, Schmidt M (2011). <a href=\"https:\/\/doi.org\/10.1016\/j.procs.2011.04.066\"><span class=\"publication-title\">A-R-E: The Author-Review-Execute Environment<\/span><\/a>, Procedia Computer Science 4:627-636 <span style=\"color:#ddd; font-size:12px\">16<\/span><\/li><li>Courtot M, Juty N, Kn\u00fcpfer C, Waltemath D, Zhukova A, Dr\u00e4ger A, Dumontier M, Finney A, Golebiewski M, Hastings J, Hoops S, Keating S, Kell DB, Kerrien S, Lawson J, Lister A, Lu J, Machne R, Mendes P, Pocock M, Rodriguez N, Villeger A, Wilkinson DJ, Wimalaratne S, Laibe C, Hucka M, Nov\u00e8re NL (2011). <a href=\"https:\/\/doi.org\/10.1038\/msb.2011.77\"><span class=\"publication-title\">Controlled vocabularies and semantics in systems biology<\/span><\/a>, Mol Syst Biol 7(1):543 <span style=\"color:#ddd; font-size:12px\">1353<\/span><\/li><\/ul><h2 id=\"publication-year-2010\">2010<\/h2><ul class=\"publications-list\"><li>Swainston N, Golebiewski M, Messiha HL, Malys N, Kania R, Kengne S, Krebs O, Mir S, Sauer-Danzwith H, Smallbone K, Weidemann A, Wittig U, Kell DB, Mendes P, Muller W, Paton NW, Rojas I (2010). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20738395\"><span class=\"publication-title\">Enzyme kinetics informatics: from instrument to browser.<\/span><\/a>, FEBS J. 2010 Sep;277(18):3769-79. doi: 10.1111\/j.1742-4658.2010.07778.x. Epub 2010 Aug 3. <span style=\"color:#ddd; font-size:12px\">18<\/span><\/li><\/ul><h2 id=\"publication-year-2009\">2009<\/h2><ul class=\"publications-list\"><li>Drager A, Planatscher H, Wouamba DM, Schroder A, Hucka M, Endler L, Golebiewski M, Muller W, Zell A (2009). <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btp170\"><span class=\"publication-title\">SBML2LATEX: Conversion of SBML files into human-readable reports<\/span><\/a>, Bioinformatics 25(11):1455-1456 <span style=\"color:#ddd; font-size:12px\">1354<\/span><\/li><\/ul><h2 id=\"publication-year-2008\">2008<\/h2><ul class=\"publications-list\"><li>Howe D, Costanzo M, Fey P, Gojobori T, Hannick L, Hide W, Hill DP, Kania R, Schaeffer M, Pierre SS, Twigger S, White O, Rhee SY (2008). <a href=\"https:\/\/doi.org\/10.1038\/455047a\"><span class=\"publication-title\">Big data: The future of biocuration<\/span><\/a>, Nature 455(7209):47-50 <span style=\"color:#ddd; font-size:12px\">28<\/span><\/li><li>Wittig U, Weidemann A, Kania R, Peiss C, Rojas I (2008). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18629066\"><span class=\"publication-title\">Classification of chemical compounds to support complex queries in a pathway database.<\/span><\/a>, Comp Funct Genomics. 2004;5(2):156-62. doi: 10.1002\/cfg.387. <span style=\"color:#ddd; font-size:12px\">22<\/span><\/li><li>Ratsch E, Schultz J, Saric J, Lavin PC, Wittig U, Reyle U, Rojas I (2008). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18629092\"><span class=\"publication-title\">Developing a protein-interactions ontology.<\/span><\/a>, Comp Funct Genomics. 2003;4(1):85-9. doi: 10.1002\/cfg.244. <span style=\"color:#ddd; font-size:12px\">23<\/span><\/li><li>Weidemann A, Richter S, Stein M, Sahle S, Gauges R, Gabdoulline R, Surovtsova I, Semmelrock N, Besson B, Rojas I, Wade R, Kummer U (2008). <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btn207\"><span class=\"publication-title\">SYCAMORE&#8211;a systems biology computational analysis and modeling research environment<\/span><\/a>, Bioinformatics 24(12):1463-1464 <span style=\"color:#ddd; font-size:12px\">27<\/span><\/li><\/ul><h2 id=\"publication-year-2007\">2007<\/h2><ul class=\"publications-list\"><li>Rojas I, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Wittig U (2007). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17822389\"><span class=\"publication-title\">Storing and annotating of kinetic data.<\/span><\/a>, In Silico Biol. 2007;7(2 Suppl):S37-44. <span style=\"color:#ddd; font-size:12px\">20<\/span><\/li><li>Krebs O, Golebiewski M, Kania R, Mir S, Saric J, Weidemann A, Wittig U, Rojas I (2007). <a href=\"https:\/\/doi.org\/10.1515\/jib-2007-49\"><span class=\"publication-title\">SABIO-RK: A data warehouse for biochemical reactions and their kinetics<\/span><\/a>, Journal of Integrative Bioinformatics 4(1):22-30 <span style=\"color:#ddd; font-size:12px\">1356<\/span><\/li><\/ul><h2 id=\"publication-year-2006\">2006<\/h2><ul class=\"publications-list\"><li>Wittig U, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Anstein S, Saric J, Rojas I (2006). <a href=\"https:\/\/doi.org\/10.1007\/11799511_9\"><span class=\"publication-title\">SABIO-RK: Integration and Curation of Reaction Kinetics Data<\/span><\/a>, Data Integration in the Life Sciences 4075:94-103,Springer Berlin Heidelberg <span style=\"color:#ddd; font-size:12px\">1357<\/span><\/li><\/ul><h2 id=\"publication-year-2004\">2004<\/h2><ul class=\"publications-list\"><li>Sosa N, Kremling A, Ratsch E, Rojas I (2004). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15506999\"><span class=\"publication-title\">Web-based visualisation of the transcriptional control network of Escherichia coli.<\/span><\/a>, In Silico Biol. 2004;4(4):507-15. <span style=\"color:#ddd; font-size:12px\">15<\/span><\/li><li>Rojas I, Ratsch E, Saric J, Wittig U (2004). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/15089756\"><span class=\"publication-title\">Notes on the use of ontologies in the biochemical domain.<\/span><\/a>, In Silico Biol. 2004;4(1):89-96. Epub 2004 Mar 15. <span style=\"color:#ddd; font-size:12px\">24<\/span><\/li><\/ul><h2 id=\"publication-year-2002\">2002<\/h2><ul class=\"publications-list\"><li>Rojas I, Bernardi L, Ratsch E, Kania R, Wittig U, Saric J (2002). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/12066842\"><span class=\"publication-title\">A database system for the analysis of biochemical pathways.<\/span><\/a>, In Silico Biol. 2002;2(2):75-86. <span style=\"color:#ddd; font-size:12px\">25<\/span><\/li><\/ul><h2 id=\"publication-year-2001\">2001<\/h2><ul class=\"publications-list\"><li>Wittig U, Beuckelaer AD (2001). <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11465731\"><span class=\"publication-title\">Analysis and comparison of metabolic pathway databases.<\/span><\/a>, Brief Bioinform. 2001 May;2(2):126-42. <span style=\"color:#ddd; font-size:12px\">21<\/span><\/li><\/ul>            <\/div>\n                                      <\/div>\n      <\/div>\n\n  <\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":3,"featured_media":40662,"parent":48,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"page-templates\/group.php","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"hits-research-group":[1304],"class_list":["post-4749","page","type-page","status-publish","has-post-thumbnail","hentry","hits-research-group-sdbv-de"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.2 - 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