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BEGIN:VEVENT
DTSTART;VALUE=DATE:20190917
DTEND;VALUE=DATE:20190920
DTSTAMP:20260503T224058
CREATED:20190326T082017Z
LAST-MODIFIED:20190726T133647Z
UID:33460-1568678400-1568937599@www.h-its.org
SUMMARY:German Conference on Bioinformatics – GCB2019
DESCRIPTION:
URL:https://www.h-its.org/event/gcb2019/
LOCATION:Heidelberg\, Heidelberg\, 69115\, Germany
CATEGORIES:Workshops and Conferences
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20190909T110000
DTEND;TZID=Europe/Berlin:20190909T120000
DTSTAMP:20260503T224058
CREATED:20190715T122756Z
LAST-MODIFIED:20190827T150307Z
UID:38362-1568026800-1568030400@www.h-its.org
SUMMARY:Colloquium Richard A. Bonneau: Large Scale Machine Learning Methods for Predicting Protein Functions from integration of Sequence\, Structure and Networks
DESCRIPTION:By Prof. Dr. Richard A. Bonneau\, Professor of Biology and Computer Science; Director\, NYU Center for Data Science\, New York\, USA \nVladimir Gligorijevic\, P Douglas Renfrew and Richard Bonneau. \nDue to limitations of existing experimental methods for determining protein functions and the high cost of experiments\, the vast majority of proteins across many organisms remain unannotated.  Developing ML methods for combining large-scale genome-wide heterogeneous data to extract useful protein feature representations for function prediction thus remains a key problem in biology.   This problem also serves to illustrate many general aspects of multiple applications of machine learning to biological sequences. We will review a few of our recent deep learning-based methods for predicting function from various data types\, including protein sequences\, structures and protein-protein interaction networks. We will first present our recent integrative method\, deepNF (deep network fusion) that integrates different protein-protein interaction networks using multi-modal network auto-encoders to construct a shared protein feature representation indicative of protein function. In the second part of the talk\, we will focus on methods for predicting function from combining protein sequence and structure. This discussion will center on a method based on graph convolutional networks (GCNs) which extracts features from protein contact maps and sequences while learning to predict function. We will discuss the performance of GCN in predicting functions of experimentally determined structures from PDB and how we are planning on applying this method on Rosetta-predicted structures.  Our hope is to predict protein function in a manner that allows us to map the predicted function back to residues\, locations on structures\, and network neighborhoods in manner that facilitates experimental followup. \nCurriculum vitae: \nDr. Bonneau is Group Leader for Systems Biology at the newly founded Flatiron Institute in New York City and also Director of the New York University Center for Data Science.  His group works on inferring and modeling both biological and social networks (at the Simons foundation and the SMaPP lab at NYU respectively)\, developing new methods to learn very large networks from large collections of genomics data.   His group actively participates in applying these methods to ongoing systems biology consortia efforts that span bacteria\, model systems\, bacteria\, the immune system and crop plants. His group also develops methods for the prediction and design of bio molecular polymers (and polymers that mimic biological structure).  To carry out this work his group develops Rosetta as a core member of the RosettaCommons; Dr. Bonneau is a founding member of the Rosetta commons and a member of the RosettaCommons executive board. Dr. Bonneau is committed to doing all he can to leverage his position as Director of the Center for Data Science to help increase diversity in the many computational fields that comprise what we today refer to as the field of data science. \nREGISTRATION: \n\nFor registration please contact Benedicta Frech: benedicta.frech@h-its.org \nIn case you are not able to attend in person\, you can watch the talk afterwards on the HITS YouTube channel: https://www.youtube.com/user/TheHITSters.\nThe colloquium will be live streamed\, please use the following link: https://hitsmediaweb.h-its.org/Mediasite/Play/0d38e9bc22344589b572c45a711af3671d
URL:https://www.h-its.org/event/colloquium-richard-bonneau/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Colloquia,Public Events
ATTACH;FMTTYPE=image/jpeg:https://www.h-its.org/wp-content/uploads/2019/07/Rich-Bonneau.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20190715T110000
DTEND;TZID=Europe/Berlin:20190715T120000
DTSTAMP:20260503T224058
CREATED:20190709T083656Z
LAST-MODIFIED:20190709T122906Z
UID:38274-1563188400-1563192000@www.h-its.org
SUMMARY:Colloquium Peter Hunter: Computational Physiology and the Physiome Project
DESCRIPTION:By Prof. Dr. Peter Hunter\, Auckland Bioengineering Institute\, University of Auckland\, New Zealand \nComputational physiological models deal with multiple physical processes (coupled tissue mechanics\, electrical activity\, fluid flow\, etc) at multiple spatial and temporal scales. In many cases the goal is to understand integrative biological function in terms of underlying tissue structure and molecular mechanisms. These models are intended both to help understand physiological function and to provide a basis for diagnosing and treating pathologies in a clinical setting. The Physiome Project is developing model and data encoding standards\, web accessible databases and open source software for multiscale modelling (e.g. www.cellml.org). A new journal called Physiome will soon be launched to publish reproducible and reusable models. The talk will discuss the current state of the Physiome Project\, including a summary of a multi-physics mathematical framework based on port-Hamiltonians for modelling physiology\, and a project to map the pathways of the autonomic nervous system (commonfund.nih.gov/sparc). \nCurriculum vitae: \nProfessor Peter Hunter is Director of the Auckland Bioengineering Institute (ABI) at the University of Auckland\, and founding Director of the Medical Technologies Centre of Research Excellence (MedTech CoRE). His research interests are in modeling human physiology using an anatomical and biophysically-based multiscale approach that links molecular processes to tissue level phenotypes. He was awarded the Rutherford Medal and a KEA World Class NZ award in 2009 and appointed to the NZ Order of Merit in 2010. He is an elected Fellow of the Royal Society (London and NZ)\, President of the World Council of Biomechanics\, 2nd Vice-President of the International Union of Physiological Sciences (IUPS)\, and past-Chair of the International Academy of Medical and Biological Engineering. \nRegistration is closed. \nThe colloquium will be live streamed\, please use the following link: https://hitsmediaweb.h-its.org/Mediasite/Play/22f74231fb8f494ab7b719c52b17d5a01d
URL:https://www.h-its.org/event/colloquium-peter-hunter/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Colloquia,Public Events
ATTACH;FMTTYPE=image/jpeg:https://www.h-its.org/wp-content/uploads/2019/07/Hunter.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20190715
DTEND;VALUE=DATE:20190720
DTSTAMP:20260503T224058
CREATED:20190510T083329Z
LAST-MODIFIED:20190527T090357Z
UID:35292-1563148800-1563580799@www.h-its.org
SUMMARY:COMBINE 2019 Meeting
DESCRIPTION:The “Computational Modeling in Biology” Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology\, synthetic biology and related fields. COMBINE 2019 will be a workshop-style event with invited lectures\, oral presentations and posters\, but also reserving enough time for afternoon breakout sessions. The five meeting days will include talks about the COMBINE standards and associated or related standardization efforts\, as well as presentations of tools using these standards and similar topics. Some oral presentations will be selected from the abstracts submitted by the attendees. In addition\, poster sessions will allow people to inform each other about their software and other projects in a setting that fosters interaction and in-depth discussion. The first day (Monday July 15th) will be a colloquium day celebrating the 10th anniversary of the COMBINE network. \nThe meeting is organized by international members of the network\, including Martin Golebiewski and Wolfgang Müller from the Scientific Databases and Visualization (SDBV) group at HITS. \nYou can find the agenda as well as the registration form on the conference page here.
URL:https://www.h-its.org/event/combine-2019-meeting/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Workshops and Conferences
ATTACH;FMTTYPE=image/png:https://www.h-its.org/wp-content/uploads/2019/05/COMBINE.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20190712T160000
DTEND;TZID=Europe/Berlin:20190712T170000
DTSTAMP:20260503T224058
CREATED:20190517T134433Z
LAST-MODIFIED:20190627T123325Z
UID:35866-1562947200-1562950800@www.h-its.org
SUMMARY:Colloquium Rainer Malaka: Empowering People with Digital Media: Playful and Natural Human Computer Interaction
DESCRIPTION:By Prof. Dr. Rainer Malaka\, Technology Center Informatics and Information Technology (TZI)\, University of Bremen\nDigital Media are omnipresent and ubiquitous phenomena. The digital revolution has already transformed our lives and societies. This trend will continue and include more devices in our surrounding such as cars and household robots. In this new digital society\, Human Computer Interaction (HCI) will shape the way we think\, communicate\, and work. We co-exist in a digital society with a global infrastructure of information technology. The talk will look at perspectives of HCI that supports humans in their abilities and motivates them in solving their everyday tasks. Playful elements and computer games seem to be promising tools to shape new forms of interaction that turn tedious work into playful activities. We will look at some techniques from entertainment computing and discuss their potential for HCI and serious applications.\nThe talk will give a number of examples of systems that show how natural and playful interaction can be used for empowering people with digital media. \nCurriculum vitae:\nRainer Malaka is Professor for Digital Media at the University of Bremen since 2006. The focus of Dr. Malaka’s work is Digital Media\, Interaction\, and Entertainment Computing. At the University of Bremen\, he directs a Graduate College “Empowering Digital Media” funded by the Klaus Tschira Foundation. He is also director of the TZI\, the center for computing technologies at the University of Bremen. Before joining the University of Bremen\, he led a research group at the European Media Lab in Heidelberg. He did his PhD at the University of Karlsruhe on modeling brain structures using neural networks. He is also steering board member of the Interdisciplinary College for multiple years\, a multidisciplinary international spring school on cognitive science\, neurosciences and AI.\nRainer Malaka is the German representative in and chair of IFIP’s technical committee TC14 for Entertainment Computing. \nREGISTRATION: \n\nFor registration please contact Benedicta Frech: benedicta.frech@h-its.org \nIn case you are not able to attend in person\, you can watch the talk afterwards on the HITS YouTube channel: https://www.youtube.com/user/TheHITSters.
URL:https://www.h-its.org/event/colloquium-rainer-malaka/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Colloquia,Public Events
ATTACH;FMTTYPE=image/jpeg:https://www.h-its.org/wp-content/uploads/2019/05/Rainer-Malaka2.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20190502T090000
DTEND;TZID=Europe/Berlin:20190502T130000
DTSTAMP:20260503T224058
CREATED:20190424T080920Z
LAST-MODIFIED:20230111T110821Z
UID:35269-1556787600-1556802000@www.h-its.org
SUMMARY:International Symposium Computational Astrophysics
DESCRIPTION:From 2-3 May 2019 the International Symposium Computational Astrophysics takes place in the Studio Villa Bosch Heidelberg. \nRegistration:\nchristina.blach@h-its.org \nParking:\n„Unter der Boschwiese“ (free of charge)
URL:https://www.h-its.org/event/international-symposium-computational-astrophysics/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Colloquia
ATTACH;FMTTYPE=image/jpeg:https://www.h-its.org/wp-content/uploads/2019/04/Vorder-und-Rückseite-des-Gebäudes_Garten-1.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20190407
DTEND;VALUE=DATE:20190411
DTSTAMP:20260503T224058
CREATED:20190326T081845Z
LAST-MODIFIED:20190326T081845Z
UID:33455-1554595200-1554940799@www.h-its.org
SUMMARY:12th International Biocuration Conference
DESCRIPTION:
URL:https://www.h-its.org/event/12th-international-biocuration-conference/
LOCATION:Cambridge\, Cambridge\, United Kingdom
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20190318
DTEND;VALUE=DATE:20190320
DTSTAMP:20260503T224058
CREATED:20190326T081557Z
LAST-MODIFIED:20190326T085553Z
UID:33449-1552867200-1553039999@www.h-its.org
SUMMARY:Tools for Systems biology modeling and data exchange: COPASI\, CellNetAnalyzer\, SABIO-RK\, FAIRDOMHub/SEEK
DESCRIPTION:
URL:https://www.h-its.org/event/tools-for-systems-biology-modeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek/
LOCATION:Heidelberg\, Heidelberg\, 69115\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20190206T110000
DTEND;TZID=Europe/Berlin:20190206T150000
DTSTAMP:20260503T224058
CREATED:20190128T163816Z
LAST-MODIFIED:20260126T100139Z
UID:28844-1549450800-1549465200@www.h-its.org
SUMMARY:Colloquium Alexander Mäder: How AI could help journalists
DESCRIPTION:By Prof. Alexander Mäder\, Hochschule der Medien\, Crossmedia-Redaktion/Public Relations\, Stuttgart \nIn the old days\, not long ago\, journalists found out what happened and then reported it. But digitalization has changed this fundamentally. Not only is there less time to do the research but also other actors are weighing in with their own take of what’s happening. However\, digitalization also offers new tools to make reporting more thorough: Artificial intelligence could help journalists find credible sources and integrate their reader’s expertise. \nCurriculum vitae \nAlexander Mäder teaches digital news journalism at the Hochschule der Medien in Stuttgart. He has worked as a science journalist for 15 years at several newspapers\, magazines and websites. His PhD is in Philosophy of Science. \n  \nRegistration \nFor registration please contact Benedicta Frech: benedicta.frech@h-its.org\nPLEASE CLICK HERE FOR THE LIVE STREAM.
URL:https://www.h-its.org/event/colloquium-alexander-maeder-how-ai-could-help-journalists/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Public Events
ATTACH;FMTTYPE=image/jpeg:https://www.h-its.org/wp-content/uploads/2019/01/annasch_photo.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20181206
DTEND;VALUE=DATE:20181208
DTSTAMP:20260503T224058
CREATED:20190326T082129Z
LAST-MODIFIED:20190326T082129Z
UID:33462-1544054400-1544227199@www.h-its.org
SUMMARY:4th Systems Biology Developers Foundry (FAIRDOM/de.NBI)
DESCRIPTION:
URL:https://www.h-its.org/event/4th-systems-biology-developers-foundry-fairdom-de-nbi/
LOCATION:Frankfurt / Main\, Frankfurt / Main\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20181027
DTEND;VALUE=DATE:20181028
DTSTAMP:20260503T224058
CREATED:20190326T082208Z
LAST-MODIFIED:20190326T082242Z
UID:33465-1540598400-1540684799@www.h-its.org
SUMMARY:FAIRDOM User Meeting
DESCRIPTION:
URL:https://www.h-its.org/event/fairdom-user-meeting/
LOCATION:Lyon\, Lyon\, France
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20181027
DTEND;VALUE=DATE:20181028
DTSTAMP:20260503T224058
CREATED:20190326T082324Z
LAST-MODIFIED:20190326T082324Z
UID:33468-1540598400-1540684799@www.h-its.org
SUMMARY:COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology
DESCRIPTION:
URL:https://www.h-its.org/event/combine-de-nbi-tutorial-modelling-and-simulation-tools-in-systems-biology/
LOCATION:Lyon\, Lyon\, France
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20180903
DTEND;VALUE=DATE:20180908
DTSTAMP:20260503T224058
CREATED:20190326T082446Z
LAST-MODIFIED:20190326T082714Z
UID:33470-1535932800-1536364799@www.h-its.org
SUMMARY:de.NBI Summer School 2018: Riding the Data Life Cycle
DESCRIPTION:
URL:https://www.h-its.org/event/de-nbi-summer-school-2018-riding-the-data-life-cycle/
LOCATION:Braunschweig\, Braunschweig\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20180704
DTEND;VALUE=DATE:20180705
DTSTAMP:20260503T224058
CREATED:20190326T082805Z
LAST-MODIFIED:20190326T082805Z
UID:33473-1530662400-1530748799@www.h-its.org
SUMMARY:How to share FAIR — The FAIRDOM Data and Model Management Practice
DESCRIPTION:
URL:https://www.h-its.org/event/how-to-share-fair-the-fairdom-data-and-model-management-practice/
LOCATION:Bremen\, Bremen\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20180426
DTEND;VALUE=DATE:20180429
DTSTAMP:20260503T224058
CREATED:20190326T082908Z
LAST-MODIFIED:20200218T095739Z
UID:33476-1524700800-1524959999@www.h-its.org
SUMMARY:Tools for Systems biology modeling and data exchange: COPASI\, CellNetAnalyzer\, SABIO-RK\, SEEK
DESCRIPTION:
URL:https://www.h-its.org/event/tools-for-systems-biology-modeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-seek/
LOCATION:Magdeburg\, Magdeburg\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20180416
DTEND;VALUE=DATE:20180419
DTSTAMP:20260503T224058
CREATED:20190325T135754Z
LAST-MODIFIED:20190325T135754Z
UID:33321-1523836800-1524095999@www.h-its.org
SUMMARY:Announcing Fourth Biological Diffusion and Brownian Dynamics Brainstorm Meeting (BDBDB 4)
DESCRIPTION:Biological Diffusion and Brownian Dynamics Brainstorm 4 (BDBDB4) will\, like the previous meetings (the last was BDBDB3)\, provide a forum for intensive discussions about the current state of experimental and theoretical studies of biological diffusion\, with a focus on the Brownian Dynamics method for simulating biological macromolecules. The first BDBDB meeting was held in 2007 and they have taken place at irregular intervals since then. \nFurther information on BDBDB 4 could be found here.
URL:https://www.h-its.org/event/announcing-fourth-biological-diffusion-and-brownian-dynamics-brainstorm-meeting-bdbdb-4/
LOCATION:Studio Villa Bosch\, Schloss-Wolfsbrunnenweg 33\, Heidelberg\, 69118\, Germany
CATEGORIES:Workshops and Conferences
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20171122
DTEND;VALUE=DATE:20171124
DTSTAMP:20260503T224058
CREATED:20190326T082955Z
LAST-MODIFIED:20190326T082955Z
UID:33479-1511308800-1511481599@www.h-its.org
SUMMARY:FAIRDOM – LiSyM – de.NBI Data Structuring Course
DESCRIPTION:
URL:https://www.h-its.org/event/fairdom-lisym-de-nbi-data-structuring-course/
LOCATION:Hünfeld\, Hünfeld\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Berlin:20170806T080000
DTEND;TZID=Europe/Berlin:20170806T170000
DTSTAMP:20260503T224058
CREATED:20190326T083041Z
LAST-MODIFIED:20190326T083041Z
UID:33482-1502006400-1502038800@www.h-its.org
SUMMARY:COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in Systems Biology
DESCRIPTION:
URL:https://www.h-its.org/event/combine-de-nbi-tutorial-modelling-and-simulation-tools-in-systems-biology-2/
LOCATION:Blacksburg\, Blacksburg\, VA\, United States
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20160530
DTEND;VALUE=DATE:20160601
DTSTAMP:20260503T224058
CREATED:20190326T083121Z
LAST-MODIFIED:20260413T121849Z
UID:33485-1464566400-1464739199@www.h-its.org
SUMMARY:Kinetics on the move: Workshop on Data for Computational Modeling
DESCRIPTION:
URL:https://www.h-its.org/event/kinetics-on-the-move-workshop-on-data-for-computational-modeling/
LOCATION:Heidelberg\, Heidelberg\, 69115\, Germany
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20151014
DTEND;VALUE=DATE:20151015
DTSTAMP:20260503T224058
CREATED:20190611T094800Z
LAST-MODIFIED:20190611T094800Z
UID:37423-1444780800-1444867199@www.h-its.org
SUMMARY:2015: Lectures and Hands-on sessions in computational molecular biophysics
DESCRIPTION:You find the lecture slides and the material for practicals here (restricted access). \nComputational Molecular Biophysics: Schedule\n\n\n\nDate\nL/P\nTopic\nLecturer\n\n\n14.10.\nL\nIntroduction into Mechanobiology\, MD\nFG\n\n\n21.10.\nP\nMD: Argon\nFG\n\n\n28.10.\nL\nMonte Carlo\, MD and force fields\nFG\n\n\n4.11.\nP\nMD: ubiquitin\nFG\n\n\n11.11.\nL\nMD and force probe MD\nFG\n\n\n18.11.\nL\nCalculating free energies in MD\nFG\n\n\n25.11.\nL\nMD with combined quantum/classical mechanics\nFG\n\n\n2.12.\nL\nCoarse graining\, multi-scale challenges\nFG\n\n\n9.12.\nP\nMD: ubiquitin\nFG\n\n\n16.12.\nP\nforce-probe MD: ubiquitin\nFG\n\n\n23.12.?\nL\nL/P finite element analysis\nFG\n\n\n13.1.\nP\nBD\nRW\n\n\n20.1.\nL\nBD\nRW\n\n\n27.1.\nP\nBD\nRW\n\n\n3.2.\nL\nBD\nRW\n\n\n\n  \nP: practical\, CIP POOL \nL: lecture\, seminar room \nTutors during tutorials: \nKatra Kolsek\, Csaba Daday\, Ana Herrera-Rodriguez \nHow can a bird sense magnetic fields\, how does our ear detect sound waves\, how does our bone feel gravitation? It is the physics of individual molecules that dictate these and many other processes in life. \nThis course introduces computational methods to study the structure\, dynamics and mechanics of biomolecules at different scales. It aims at endowing the students with an understanding of the principles\, the capacity and limitations of different numerical simulation techniques with an emphasis on Molecular Dynamics simulations. The course comprises alternating lectures and hands-on computer tutorials of which the latter are meant to directly demonstrate the principles of running and analyzing computer simulations of biological matter. Lectures and hands-on computer tutorials will take place alternately in the seminar room SR043 and the CIP-Pool (both Bioquant). The lectures/tutorials will take place once a week\, on Wed from 4 to 5.30 pm (2 SWS)\, starting now on October 14\, 2015. Lectures will be given by Prof. Frauke Gräter and  Prof. Rebecca Wade. \nThe lectures will be targeted to advanced Bachelor\, Master and interested PhD students and will be complemented by hands-on computer sessions in which the students will have the opportunity to run molecular simulations supervised by Dr. Katra Kolšek\, Dr. Csaba Daday and Ms. Ana Herrera-Rodriguez. \nResources:\n\nSchlick\, “Molecular Modelling and Simulation”\, Springer\, 2010\n\nM.P. Allen and Tildesley\, “Computer Simulation of Liquids”\, Oxford Science Publishers. (Great book with a focus on Molecular Dynamics simulations) \n\nFrenkel und B. Smit. “Understanding molecular simulation” Academic\, San Diego\, 2002\, (covers MD\, MC and Stat Mech)\nDill and S. Bromberg\, “Molecular Driving Forces”\, Taylor & Francis Inc\, 2010\n\nwww.gromacs.org open source molecular simulation software used in the tutorial\, for both atomistic MD and coarse-grained Brownian dynamics simulations. Comes with an extensive manual\, which includes the principles of MD simulations and biomolecular force fields. \nhttp://cando-dna-origami.org/ web-based finite element software for mechanics/dynamics of DNA sculptures
URL:https://www.h-its.org/event/2015-lectures-and-hands-on-sessions-in-computational-molecular-biophysics/
END:VEVENT
END:VCALENDAR