RAxML next generation
The all new, from scratch re-design of RAxML: better, faster, more scalable, easier to use.
ModelTest next generation
The all new faster ModelTest, superseding jModelTest and ProtTest.
Visual Tree Comparer
A simple graphical tree comparison tool that visualizes differences between up to four different trees by highlighting the branches (bipartitions/splits) …
Tree Visualization Tool (very old)
Old Tree visualization tool using treemaps and taxonomic information.
AxParafit
Highly optimized versions of Pierre Legendre’s Parafit and DistPCoA programs for statistical analysis of host-parasite coevolution.
Dppdiv
An optimized (using vector intrinsics) and parallelized version (using OpenMP) of the DPPDIV (original code by Tracy Heath) code for estimating …
Phylogenetic Binning tool
The code from the paper: S. Berger, R. Lücking, A. Stamatakis on “Morphology-based phylogenetic binning of the lichen genera Graphis …