2021 López F, Pozzetti B, Trettel S, Strube M, Wienhard A (2021). Vector-valued Distance and Gyrocalculus on the Space of Symmetric Positive Definite Matrices. , In Proceedings of the Thirty-fifth Conference on Neural Information Processing Systems (NeurIPS 2021), Online, December 6-12, 2021. 1287 Mukherjee G, Nandekar PP, Wade RC (2021). An electron transfer competent structural ensemble of membrane-bound cytochrome P450 1A1 and cytochrome P450 oxidoreductase 1165 Wronski P, Wensing M, Ghosh S, Gärttner L, Müller W, Koetsenruijter J (2021). Use of a quantitative data report in a hypothetical decision scenario for health policymaking: a computer-assisted laboratory study 1169 Aslam M, Kandasamy N, Ullah A, Paramasivam N, Öztürk MA, Naureen S, Arshad A, Badshah M, Khan K, Wajid M, Abbasi R, Ilyas M, Eils R, Schlesner M, Wade RC, Ahmad N, Engelhardt Jv (2021). Putative second hit rare genetic variants in families with seemingly GBA-associated Parkinson’s disease 1208 Serenelli A, Weiss A, Aerts C, Angelou GC, Baroch D, Bastian N, Beck PG, Bergemann M, Bestenlehner JM, Czekala I, Elias-Rosa N, Escorza A, Eylen VV, Feuillet DK, Gandolfi D, Gieles M, Girardi L, Lebreton Y, Lodieu N, Martig M, Bertolami MMM, Mombarg JS, Morales JC, Moya A, Nsamba B, Pavlovski K, Pedersen MG, Ribas I, Schneider FR, Aguirre VS, Stassun KG, Tolstoy E, Tremblay P, Zwintz K (2021). Weighing stars from birth to death: mass determination methods across the HRD 1306 Fatima M, Strube M (2021). A Novel Wikipedia based Dataset for Monolingual and Cross-lingual Summarization , In Proceedings of the Third Workshop on New Frontiers in Summarization. Punta Cana, Dominican Republic, November 10, 2021. 1288 Jeon S, Strube M (2021). Countering the Influence of Essay Length in Neural Essay Scoring. , In Proceedings of the Second Workshop on Sustainable NLP. Punta Cana, Domincan Republic, November 10, 2021. 1289 S K, J Y, R M, V N, Poesio M, Strube M, C R (2021). The CODI-CRAC 2021 Shared Task on Anaphora, Bridging, and Discourse Deixis Resolution in Dialogue. 1290 Sadiq SK, Chicharro AM, Friedrich P, Wade RC (2021). Multiscale Approach for Computing Gated Ligand Binding from Molecular Dynamics and Brownian Dynamics Simulations 1305 Gianniotis N, Nuñez FP, Polsterer KL (2021). Disentangling the optical AGN and host-galaxy luminosity with a probabilistic flux variation gradient 1303 Bianciotto M, Gkeka P, Kokh DB, Wade RC, Minoux H (2021). Contact Map Fingerprints of Protein–Ligand Unbinding Trajectories Reveal Mechanisms Determining Residence Times Computed from Scaled Molecular Dynamics 1280 Kokh DB, Wade RC (2021). G Protein-Coupled Receptor–Ligand Dissociation Rates and Mechanisms from τRAMD Simulations 1281 Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta‐Resendiz A, Singh V, Aghamiri SS, Acencio ML, Glaab E, Ruepp A, Fobo G, Montrone C, Brauner B, Frishman G, Gómez LCM, Somers J, Hoch M, Gupta SK, Scheel J, Borlinghaus H, Czauderna T, Schreiber F, Montagud A, Leon MPd, Funahashi A, Hiki Y, Hiroi N, Yamada TG, Dräger A, Renz A, Naveez M, Bocskei Z, Messina F, Börnigen D, Fergusson L, Conti M, Rameil M, Nakonecnij V, Vanhoefer J, Schmiester L, Wang M, Ackerman EE, Shoemaker JE, Zucker J, Oxford K, Teuton J, Kocakaya E, Summak GY, Hanspers K, Kutmon M, Coort S, Eijssen L, Ehrhart F, Rex DAB, Slenter D, Martens M, Pham N, Haw R, Jassal B, Matthews L, Orlic‐Milacic M, Ribeiro AS, Rothfels K, Shamovsky V, Stephan R, Sevilla C, Varusai T, Ravel J, Fraser R, Ortseifen V, Marchesi S, Gawron P, Smula E, Heirendt L, Satagopam V, Wu G, Riutta A, Golebiewski M, Owen S, Goble C, Hu X, Overall RW, Maier D, Bauch A, Gyori BM, Bachman JA, Vega C, Grouès V, Vazquez M, Porras P, Licata L, Iannuccelli M, Sacco F, Nesterova A, Yuryev A, Waard Ad, Turei D, Luna A, Babur O, Soliman S, Valdeolivas A, Esteban‐Medina M, Peña‐Chilet M, Rian K, Helikar T, Puniya BL, Modos D, Treveil A, Olbei M, Meulder BD, Ballereau S, Dugourd A, Naldi A, Noël V, Calzone L, Sander C, Demir E, Korcsmaros T, Freeman TC, Augé F, Beckmann JS, Hasenauer J, Wolkenhauer O, Wilighagen EL, Pico AR, Evelo CT, Gillespie ME, Stein LD, Hermjakob H, D'Eustachio P, Saez‐Rodriguez J, Dopazo J, Valencia A, Kitano H, Barillot E, Auffray C, Balling R, Schneider R (2021). COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms 1291 Obarska-Kosinska A, Rennekamp B, Ünal A, Gräter F (2021). ColBuilder: A server to build collagen fibril models. 1295 De M, Öztürk MA, Isbaner S, Tóth K, Wade RC (2021). DNA sequence-dependent positioning of the linker histone in a nucleosome: A single-pair FRET study 1276 Frost A, Mahy L, Sana H, LeBouquin J-, Wade G, Merand A, Schneider F, Shenar T, Barbá R, Barron J, Bowman D, Fabry M, Farhang A, Morrell N, Munoz M, Smoker J (2021). A massive binary system with a single magnetic star 1307 Schneider F (2021). State-of-the-art evolution models for single, binary and magnetic massive stars 1308 Lutteropp S, Scornavacca C, Kozlov AM, Morel B, Stamatakis A (2021). NetRAX: Accurate and Fast Maximum Likelihood Phylogenetic Network Inference
⋆ 1296 Rusnati M, Paiardi G, Tobia C, Urbinati C, Lodola A, D’Ursi P, Corrado M, Castelli R, Wade RC, Tognolini M, Chiodelli P (2021). Cholenic acid derivative UniPR1331 impairs tumor angiogenesis via blockade of VEGF/VEGFR2 in addition to Eph/ephrin 1283 Bodensteiner J, Sana H, Wang C, Langer N, Mahy L, Banyard G, Koter Ad, Mink Sd, Evans C, Götberg Y, Patrick L, Schneider F, Tramper F (2021). The young massive SMC cluster NGC 330 seen by MUSE. II. Multiplicity properties of the massive-star population 1309 Nunes-Alves A, Ormersbach F, Wade RC (2021). Prediction of the Drug–Target Binding Kinetics for Flexible Proteins by Comparative Binding Energy Analysis 1275 Schmidt CO, Fluck J, Golebiewski M, Grabenhenrich L, Hahn H, Kirsten T, Klammt S, Löbe M, Sax U, Thun S, Pigeot I, Ahrens W, Darms J, Henke J, Hu X, Klopfenstein S, Langnickel L, Lassen-Schmidt B, Pohlabeln H, Lieser M, Näher A, Scholz M, Vorisek C, Waltemath D, Wünsche H (2021). COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur 1278 Mahé F, Czech L, Stamatakis A, Quince C, Vargas Cd, Dunthorn M, Rognes T (2021). Swarm v3: towards tera-scale amplicon clustering 1297 Sigmund LM, Ehlert C, Enders M, Graf J, Gryn'ova G, Greb L (2021). Dioxygen Activation and Pyrrole α‐Cleavage with Calix[4]pyrrolato Aluminates: Enzyme Model by Structural Constraint 1282 Haupt S, Gleim N, Ahadova A, Bläker H, Doeberitz MvK, Kloor M, Heuveline V (2021). A computational model for investigating the evolution of colonic crypts during Lynch syndrome carcinogenesis 1317 Bettisworth B, Stamatakis A (2021). Phylourny: Predicting the Knock-out-phase of Tournaments via Phylogenetic Methods by example of the UEFA EURO 2020 1279 Gossen J, Albani S, Hanke A, Joseph BP, Bergh C, Kuzikov M, Costanzi E, Manelfi C, Storici P, Gribbon P, Beccari AR, Talarico C, Spyrakis F, Lindahl E, Zaliani A, Carloni P, Wade RC, Musiani F, Kokh DB, Rossetti G (2021). A Blueprint for High Affinity SARS-CoV-2 Mpro Inhibitors from Activity-Based Compound Library Screening Guided by Analysis of Protein Dynamics 1253 Müller M, Ghosh S, Wittig U, Rey M (2021). Word-Level Alignment of Paper Documents with their Electronic Full-Text Counterparts 1265 Reinhardt M, Bruce NJ, Kokh DB, Wade RC (2021). Brownian Dynamics Simulations of Proteins in the Presence of Surfaces: Long-Range Electrostatics and Mean-Field Hydrodynamics 1274 Bauswein A, Blacker S, Lioutas G, Soultanis T, Vijayan V, Stergioulas N (2021). Systematics of prompt black-hole formation in neutron star mergers 1270 Psonis N, Antoniou A, Karameta E, Darriba D, Stamatakis A, Lymberakis P, Poulakakis N (2021). The wall lizards of the Balkan peninsula: Tackling questions at the interface of phylogenomics and population genomics 1300 Frost A, Mahy L, Sana H, Barba R, Barron J, Bowman D, Fabry M, Bouquin J-L, Morrell N, Marchant P, Merand A, Munoz M, Schneider F, Shenar T, Wade G (2021). Observational evidence of coalescence as a viable cause of magnetism in massive stars 1310 Shenar T, Sana H, Marchant P, Pablo B, Richardson N, Moffat A, Reeth TV, Barbá R, Bowman D, Broos P, Crowther P, Clark J, Koter Ad, Mink Sd, Dsilva K, Gräfener G, Howarth I, Langer N, Mahy L, Apellániz JM, Pollock A, Schneider F, Townsley L, Vink J (2021). The Tarantula Massive Binary Monitoring. V. R 144: a wind-eclipsing binary with a total mass ensuremath≳140 M_ensuremath⊙ 1311 Schmidt CO, Darms J, Shutsko A, Lobe M, Nagrani R, Seifert B, Lindstadt B, Golebiewski M, Koleva S, Bender T, Bauer CR, Sax U, Hu X, Lieser M, Junker V, Klopfenstein S, Zeleke A, Waltemath D, Pigeot I, Fluck J (2021). Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies. 1277 Glaser M, Bruce NJ, Han SB, Wade RC (2021). Simulation of the Positive Inotropic Peptide S100A1ct in Aqueous Environment by Gaussian Accelerated Molecular Dynamics 1267 Song C, Roller J, Ponce-Bobadilla AV, Palacio-Escat N, Saez-Rodriguez J, Heuveline V (2021). Spatial Effect on Separatrix of Two-Cell System and Parameter Sensitivity Analysis 1315 Jin F, Gräter F (2021). How multisite phosphorylation impacts the conformations of intrinsically disordered proteins. 1294 Jayme A, Lösel P, Heuveline V (2021). Comparison of Machine Learning Methods for Predicting Employee Absences 1314 Berger B, Amaral M, Kokh DB, Nunes-Alves A, Musil D, Heinrich T, Schröder M, Neil R, Wang J, Navratilova I, Bomke J, Elkins JM, Müller S, Frech M, Wade RC, Knapp S (2021). Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK2 1215 Paiardi G, Milanesi M, Wade RC, D’Ursi P, Rusnati M (2021). A Bittersweet Computational Journey among Glycosaminoglycans 1273 Hirai R, Podsiadlowski P, Owocki SP, Schneider FR, Smith N (2021). Simulating the formation of ensuremathη Carinae’s surrounding nebula through unstable triple evolution and stellar merger-induced eruption 1312 Haupt S, Zeilmann A, Ahadova A, Bläker H, Doeberitz MvK, Kloor M, Heuveline V (2021). Mathematical modeling of multiple pathways in colorectal carcinogenesis using dynamical systems with Kronecker structure 1316 Piras A, Gryn'ova G (2021). The Law of Attraction: Relating Computed Energetics of Physisorption with Performance of Graphene-Based Sensors for Nitroaromatic Contaminants 1261 Ernst M, Gryn'ova G (2021). Strength and Nature of Host-Guest Interactions in Metal-Organic Frameworks from a Quantum-Chemical Perspective 1262 Dey D, Marciano S, Nunes-Alves A, Kiss V, Wade RC, Schreiber G (2021). Line-FRAP, A Versatile Method to Measure Diffusion Rates In Vitro and In Vivo 1224 Martin I, Nava M, Wickström S, Gräter F (2021). ATP allosterically stabilizes Integrin-linked kinase for efficient force generation 1257 Morel B, Schade P, Lutteropp S, Williams TA, Szöllősi GJ, Stamatakis A (2021). SpeciesRax: A tool for maximum likelihood species tree inference from gene family trees under duplication, transfer, and loss 1298 Miralles A, Ducasse J, Brouillet S, Flouri T, Fujisawa T, Kapli P, Knowles LL, Kumari S, Stamatakis A, Sukumaran J, Lutteropp S, Vences M, Puillandre N (2021). SPART, a versatile and standardized data exchange format for species partition information 1299 Ehlert C, Piras A, Gryn'ova G (2021). Assessing in Silico Models and Methods for Non-Covalent Interactions between Graphene and Small Molecules 1260 Hodcroft EB, Maio ND, Lanfear R, MacCannell DR, Minh BQ, Schmidt HA, Stamatakis A, Goldman N, Dessimoz C (2021). Want to track pandemic variants faster? Fix the bioinformatics bottleneck 1302 Piras A, Ehlert C, Gryn'ova G (2021). Sensing and sensitivity: Computational chemistry of
graphene‐based
sensors 1229 Stephens D, Herwig F, Woodward P, Denissenkov P, Andrassy R, Mao H (2021). 3D1D hydro-nucleosynthesis simulations. I. Advective-reactive post-processing method and its application to H ingestion into He-shell flash convection in rapidly accreting white dwarfs 1223 Zha J, Zhang Y, Xia K, Gräter F, Xia F (2021). Coarse-Grained Simulation of Mechanical Properties of Single Microtubules With Micrometer Length 1293 Kallinowski F, Ludwig Y, Löffler T, Vollmer M, Lösel P, Voß S, Görich J, Heuveline V, Nessel R (2021). Biomechanics applied to incisional hernia repair – Considering the critical and the gained resistance towards impacts related to pressure 1201 Higl J, Müller E, Weiss A (2021). Calibrating core overshooting parameters with two-dimensional hydrodynamical simulations 1249 Braun L, Nikas S, Song C, Heuveline V, Fröning H (2021). A Simple Model for Portable and Fast Prediction of Execution Time and Power Consumption of GPU Kernels 1203 Hübner L, Kozlov AM, Hespe D, Sanders P, Stamatakis A (2021). Exploring Parallel MPI Fault Tolerance Mechanisms for Phylogenetic Inference with RAxML-NG 1301 Salo-Ahen OMH, Alanko I, Bhadane R, Bonvin AMJJ, Honorato RV, Hossain S, Juffer AH, Kabedev A, Lahtela-Kakkonen M, Larsen AS, Lescrinier E, Marimuthu P, Mirza MU, Mustafa G, Nunes-Alves A, Pantsar T, Saadabadi A, Singaravelu K, Vanmeert M (2021). Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development 1162 Strube M (2021). Computerwissenschaften und The Circle — The Circle und Computerwissenschaften , In Kempter, Klaus und Martina Engelbrecht (Eds.): Krise(n) der Moderne. Über Literatur und Zeitdiagnostik. Universitätsverlag Winter, Heidelberg, Germany. 451-460. 1167 Schneider F, Podsiadlowski P, Müller B (2021). Pre-supernova evolution, compact-object masses, and explosion properties of stripped binary stars 1179 Schween N, Gerstner P, Meyer-Hübner N, Heuveline V (2021). New Time Step Strategy for Multi-period Optimal Power Flow Problems 1198 Dohrke J (2021). Molecular mechanisms of AMPAR modulation by auxiliary subunits , Molecular Biotechnology, Faculty of Biosciences, Ruprecht-Karls University, Heidelberg, 2021, Ariane Nunes-Alves (HITS Tutor) and Rebecca C. Wade 1207 Rey M, Weidemann A, Wittig U, Dudas D, Ghosh S, Golebiewski M, Hu X, Müller W (2021). FAST, ADAPTED, CURATED FAIR DATA FOR COVID-19 RESEARCH 1212 Moreau CA, Quadt KA, Piirainen H, Kumar H, Bhargav SP, Strauss L, Tolia NH, Wade RC, Spatz JP, Kursula I, Frischknecht F (2021). A function of profilin in force generation during malaria parasite motility that is independent of actin binding 1214 Bowden J, Crowley D, Davis J, Friedl S, Rovi C, Tillmann S (2021). Open Problems in the Topology of Manifolds 1220 Mostert RIJ, Duncan KJ, Röttgering HJA, Polsterer KL, Best PN, Brienza M, Brüggen M, Hardcastle MJ, Jurlin N, Mingo B, Morganti R, Shimwell T, Smith D, Williams WL (2021). Unveiling the rarest morphologies of the LOFAR Two-metre Sky Survey radio source population with self-organised maps 1225 Ferrand G, Warren DC, Ono M, Nagataki S, Röpke FK, Seitenzahl IR, Lach F, Iwasaki H, Sato T (2021). From Supernova to Supernova Remnant: Comparison of Thermonuclear Explosion Models 1231 Ganotra GK, Nunes-Alves A, Wade RC (2021). A Protocol to Use Comparative Binding Energy Analysis to Estimate Drug-Target Residence Time 1252 López F, Pozzetti B, Trettel S, Strube M, Wienhard A (2021). Symmetric Spaces for Graph Embeddings: A Finsler-Riemannian Approach , In Proceedings of the 38th International Conference on Machine Learning 1266 Nunes-Alves A, Kokh DB, Wade RC (2021). Ligand unbinding mechanisms and kinetics for T4 lysozyme mutants from τRAMD simulations 1268 Plier J, Savarino F, Kočvara M, Petra S (2021). First-Order Geometric Multilevel Optimization for Discrete Tomography 1304 Ghosh S, Wronski P, Koetsenruijter J, Mueller W, Wensing M (2021). Watching people decide: decision prediction using heatmaps of reading of a decision-support document 1318 Bracher J, Wolffram D, Deuschel J, Görgen K, Ketterer JL, Ullrich A, Abbott S, Barbarossa MV, Bertsimas D, Bhatia S, Bodych M, Bosse NI, Burgard JP, Castro L, Fairchild G, Fuhrmann J, Funk S, Gogolewski K, Gu Q, Heyder S, Hotz T, Kheifetz Y, Kirsten H, Krueger T, Krymova E, Li ML, Meinke JH, Michaud IJ, Niedzielewski K, Ożański T, Rakowski F, Scholz M, Soni S, Srivastava A, Zieliński J, Zou D, Gneiting T, Schienle M, Li ML, Bertsimas D, Bouardi HT, Lami OS, Soni S, Abbott S, Bosse NI, Funk S, Barbarossa MV, Fuhrmann J, Meinke JH, Bracher J, Deuschel J, Gneiting T, Görgen K, Ketterer J, Schienle M, Ullrich A, Wolffram D, Górski Ł, Gruziel-Słomka M, Kaczorek A, Moszyński A, Niedzielewski K, Nowosielski J, Radwan M, Rakowski F, Semeniuk M, Zieliński J, Bartczuk R, Kisielewski J, Bhatia S, Biecek P, Bezborodov V, Bodych M, Krueger T, Burgard JP, Heyder S, Hotz T, Osthus DA, Michaud IJ, Castro L, Fairchild G, Kheifetz Y, Kirsten H, Scholz M, Gambin A, Gogolewski K, Miasojedow B, Szczurek E, Rabczenko D, Rosińska M, Bawiec M, Bodych M, Ożański T, Pabjan B, Rafajłlowicz E, Skubalska-Rafajłowicz E, Rafajłowicz W, Migalska A, Szczurek E, Flahault A, Manetti E, Choirat C, Haro BB, Krymova E, Lee G, Obozinski G, Sun T, Thanou D, Gu Q, Xu P, Chen J, Wang L, Zou D, Zhang W, Srivastava A, Prasanna VK, Xu FT (2021). A pre-registered short-term forecasting study of COVID-19 in Germany and Poland during the second wave 1332 Henzi A, Ziegel JF, Gneiting T (2021). Isotonic distributional regression 1326 Jordan AI, Mühlemann A, Ziegel JF (2021). Characterizing the optimal solutions to the isotonic regression problem for identifiable functionals 1322 Schmidt P, Katzfuss M, Gneiting T (2021). Interpretation of point forecasts with unknown directive 1331 Krüger F, Lerch S, Thorarinsdottir T, Gneiting T (2021). Predictive Inference Based on Markov Chain Monte Carlo Output 1330 Walz E, Maranan M, Linden Rvd, Fink AH, Knippertz P (2021). An IMERG-Based Optimal Extended Probabilistic Climatology (EPC) as a Benchmark Ensemble Forecast for Precipitation in the Tropics and Subtropics 1324 Whan K, Zscheischler J, Jordan AI, Ziegel JF (2021). Novel multivariate quantile mapping methods for ensemble post-processing of medium-range forecasts 1325 Brehmer JR, Gneiting T (2021). Scoring interval forecasts: Equal-tailed, shortest, and modal interval 1327 Dimitriadis T, Schnaitmann J (2021). Forecast encompassing tests for the expected shortfall 1323 Dimitriadis T, Gneiting T, Jordan AI (2021). Stable reliability diagrams for probabilistic classifiers 1334 Vogel P, Knippertz P, Gneiting T, Fink AH, Klar M, Schlueter A (2021). Statistical Forecasts for the Occurrence of Precipitation Outperform Global Models over Northern Tropical Africa 1329 Bracher J, Ray EL, Gneiting T, Reich NG (2021). Evaluating epidemic forecasts in an interval format 1333 Matschinske J, Alcaraz N, Benis A, Golebiewski M, Grimm DG, Heumos L, Kacprowski T, Lazareva O, List M, Louadi Z, Pauling JK, Pfeifer N, Röttger R, Schwämmle V, Sturm G, Traverso A, Steen KV, Freitas MVd, Silva GCV, Wee L, Wenke NK, Zanin M, Zolotareva O, Baumbach J, Blumenthal DB (2021). The AIMe registry for artificial intelligence in biomedical research 1344 Mayer G, Muller W, Schork K, Uszkoreit J, Weidemann A, Wittig U, Rey M, Quast C, Felden J, Glockner FO, Lange M, Arend D, Beier S, Junker A, Scholz U, Schuler D, Kestler HA, Wibberg D, Puhler A, Twardziok S, Eils J, Eils R, Hoffmann S, Eisenacher M, Turewicz M (2021). Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. 1355 König M, Grzegorzewski J, Golebiewski M, Hermjakob H, Hucka M, Olivier B, Keating S, Nickerson D, Schreiber F, Sheriff R, Waltemath D (2021). Ten Simple Rules for Sharing Experimental and Clinical Data with the Modeling Community 1345 Maag D, Putzu M, Gómez-Flores CL, Gräter F, Elstner M, Kubař T (2021). Electrostatic interactions contribute to the control of intramolecular thiol–disulfide isomerization in a protein 1320 Wolffram D (2021). Building and Evaluating Forecast Ensembles for COVID-19 Deaths 1337
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