HITS Publications

2024

• Liu W, Wan S, Strube M (2024). What causes the failure of explicit to implicit discourse relation recognition?, Proceedings of the 2024 Annual Conference of the North American Chapter of the Association for Computational Linguistics, Mexico City, Mexico, June 16-21, 2024 1830
• Lau M, Hirai R, Mandel I, Tout CA (2024). Expansion of Accreting Main-sequence Stars during Rapid Mass Transfer 1836
• Jeon S, Yeh C, Inan H, Hsu W, Rungta R, Mehdad Y, Bikel D (2024). Attention or convolution: Transformer encoders in audio language models for inference efficiency, Proceedings of the Workshop on Self-supervision in Audio, Speech and Beyond at IEEE ICASSP, Seoul, South Korea, 14 April 2024, to appear. 1789
• Stiller J, Feng S, Chowdhury A, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, Cracraft J, Balaban M, Mai U, Chen G, Gao R, Zhou C, Xie Y, Huang Z, Cao Z, Yan Z, Ogilvie HA, Nakhleh L, Lindow B, Morel B, Fjeldså J, Hosner PA, Fonseca RRd, Petersen B, Tobias JA, Székely T, Kennedy JD, Reeve AH, Liker A, Stervander M, Antunes A, Tietze DT, Bertelsen M, Lei F, Rahbek C, Graves GR, Schierup MH, Warnow T, Braun EL, Gilbert MTP, Jarvis ED, Mirarab S, Zhang G (2024). Complexity of avian evolution revealed by family-level genomes, Nature 1832
• Seute L, Hartmann E, Stühmer J, Gräter F (2024). Grappa – A Machine Learned Molecular Mechanics Force Field, arXiv,physics.chem-ph,2404.00050 1828
• Ma X, Strube M, Zhao W (2024). Graph-based clustering for detecting semantic change across time and languages, Proceedings of the 18th Conference of the European Chapter of the Association for Computational Linguistics, St. Julians, Malta, 17-22 March, 2024, to appear 1788
• Haag J, Jordan AI, Stamatakis A (2024). Pandora: A Tool to Estimate Dimensionality Reduction Stability of Genotype Data, biorxiv;2024.03.14.584962v1,[Preprint] 1833
• Wiegert J, Höhler D, Haag J, Stamatakis A (2024). Predicting Phylogenetic Bootstrap Values via Machine Learning, biorxiv;2024.03.04.583288v1,[Preprint] 1834
• Morán-Fraile J, Holas A, Röpke FK, Pakmor R, Schneider FRN (2024). Faint calcium-rich transient from a double detonation of a 0.6 M⊙ carbon-oxygen white dwarf star, Astronomy and Astrophysics 1739
• Feeney T, Petry J, Torche A, Hauschild D, Hacene B, Wansorra C, Diercks A, Ernst M, Weinhardt L, Heske C, Gryn’ova G, Paetzold UW, Fassl P (2024). Understanding and exploiting interfacial interactions between phosphonic acid functional groups and co-evaporated perovskites, Matter,S2590238524000675 1816
• Andrassy R, Leidi G, Higl J, Edelmann PVF, Schneider FRN, Röpke FK (2024). Towards a self-consistent model of the convective core boundary in upper main sequence stars, A&A 683:A97 1823
• Horat N, Lerch S (2024). Deep learning for postprocessing global probabilistic forecasts on subseasonal time scales, Monthly Weather Review, 152(3):667–687 1825
• Song M, Yang D, Lerch S, Xia X, Yagli GM, Bright JM, Shen Y, Liu B, Liu X, Mayer MJ (2024). Non-crossing quantile regression neural network as a calibration tool for ensemble weather forecasts, Advances in Atmospheric Sciences, 1–21 1826
• Noll A, Basu S, Hekker S (2024). Effect of nuclear reactions rates and core boundary mixing on the seismology of red clump stars, A&A 683:A189 1827
• Leiter C, Lertvittayakumjorn P, Fomicheva M, Zhao W, Gao Y, Eger S (2024). Towards explainable evaluation metrics for machine translation, Journal of Machine Learning Research, 25(75), pp.1-49 1835
• Riedmiller K, Reiser P, Bobkova E, Maltsev K, Gryn’ova G, Friederich P, Gräter F (2024). Substituting density functional theory in reaction barrier calculations for hydrogen atom transfer in proteins, Chem. Sci. 15(7):2518-2527 1795
• Walz E, Henzi A, Ziegel J, Gneiting T (2024). Easy uncertainty quantification (EasyUQ): Generating predictive distributions from single-valued model output, SIAM Review, 66(1):91–122 1782
• Fosten J, Gutknecht D, Pohle M (2024). Testing quantile forecast optimality, Journal of Business & Economic Statistics, published online 1786
• Roessner R, Michelarakis N, Gräter F, Aponte-Santamaría C (2024). Mechanical control of the adhesion of malaria-infected erythrocytes to the placenta, Biophysical Journal,123(3):197a 1787
• Cetin M, Pinamonti V, Schmid T, Boschert T, Fuentes AM, Kromer K, Lerner T, Zhang J, Herzig Y, Ehlert C, Hernandez-Hernandez M, Samaras G, Torres CM, Fisch L, Dragan V, Kouwenhoven A, Schoubroeck BV, Wils H, Hove CV, Platten M, Green EW, Stevenaert F, Felix NJ, Lindner JM (2024). T-FINDER: A highly sensitive, pan-HLA platform for functional T cell receptor and ligand discovery, Sci. Adv. 10(5),eadk3060 1783
• Bracher J, Koster N, Krüger F, Lerch S (2024). Learning to forecast: The Probabilistic Time Series Forecasting Challenge, The American Statistician, 78(1):115–127 1660
• Brehmer JR, Gneiting T, Herrmann M, Marzocchi W, Schlather M, Strokorb K (2024). Comparative evaluation of point process forecasts, Annals of the Institute of Statistical Mathematics, 76:47–71 1692
• Henneco J, Schneider FRN, Laplace E (2024). Contact tracing of binary stars: Pathways to stellar mergers, A&A 682:A169 1814
• Arend D, Conte AD, Feser M, Gadiya Y, Gaignard A, Castro LJ, Mičetić I, Moretti S, Neumann S, Rayya N, Tsueng G, Willighagen E, Wittig U (2024). Bioschemas Resource Index for Chem and Plants, osf.io/yxunp,[Preprint] 1777
• Buchele L, Bellinger EP, Hekker S, Basu S, Ball W, Christensen-Dalsgaard J (2024). Asteroseismic Inversions for Internal Sound Speed Profiles of Main-sequence Stars with Radiative Cores, ApJ 961(2):198 1773
• Back S, Aspuru-Guzik A, Ceriotti M, Gryn'ova G, Grzybowski B, Gu GH, Hein J, Hippalgaonkar K, Hormázabal R, Jung Y, Kim S, Kim WY, Moosavi SM, Noh J, Park C, Schrier J, Schwaller P, Tsuda K, Vegge T, Lilienfeld OAv, Walsh A (2024). Accelerated chemical science with AI, Digital Discovery 3(1):23-33 1772
• Golebiewski GMM (2024). EDITH standards implementation guide (IG) 1775
• Golebiewski GMM (2024). Standardization landscape, needs and gaps for the virtual human twin (VHT) 1817
• Golebiewski GMM (2024). EDITH standards implementation guide (IG) 1818
• Riedmiller K, Reiser P, Bobkova E, Maltsev K, Gryn'ova G, Friederich P, Gräter F (2024). Substituting density functional theory in reaction barrier calculations for hydrogen atom transfer in proteins, Chemical Science 1770
• Riedmiller K, Reiser P, Bobkova E, Maltsev K, Gryn’ova G, Friederich P, Gräter F (2024). Substituting density functional theory in reaction barrier calculations for hydrogen atom transfer in proteins, Chem. Sci.,10.1039.D3SC03922F 1781
• Li S, Sanhueza P, Beuther H, Chen HV, Kuiper R, Olguin FA, Pudritz RE, Stephens IW, Zhang Q, Nakamura F, Lu X, Kuruwita RL, Sakai T, Henning T, Taniguchi K, Li F (2024). Observations of high-order multiplicity in a high-mass stellar protocluster, Nat Astron 1771
• Moran-Fraile J, Roepke FK, Pakmor R, Aloy MA, Ohlmann ST, Schneider FRN, Leidi G (2024). Self-consistent magnetohydrodynamic simulation of jet launching in a neutron star – white dwarf merger, Astronomy & Astrophysics 1738
• Richter S, Jin F, Ritterhoff T, Fergin A, Maurer E, Frank A, Hajnal A, Klevit R, Gräter F, Flotho A, Melchior F (2024). SUMO’s intrinsically disordered N-terminus is an intramolecular inhibitor of SUMO – SIM interactions, bioRxiv 1763
• Schimunek J, Seidl P, Elez K, Hempel T, Le T, Noé F, Olsson S, Raich L, Winter R, Gokcan H, Gusev F, Gutkin EM, Isayev O, Kurnikova MG, Narangoda CH, Zubatyuk R, Bosko IP, Furs KV, Karpenko AD, Kornoushenko YV, Shuldau M, Yushkevich A, Benabderrahmane M, Bousquet-Melou P, Bureau R, Charton B, Cirou B, Gil G, Allen WJ, Sirimulla S, Watowich S, Antonopoulos N, Epitropakis N, Krasoulis A, Pitsikalis V, Theodorakis S, Kozlovskii I, Maliutin A, Medvedev A, Popov P, Zaretckii M, Eghbal-zadeh H, Halmich C, Hochreiter S, Mayr A, Ruch P, Widrich M, Berenger F, Kumar A, Yamanishi Y, Zhang K, Bengio E, Bengio Y, Jain M, Korablyov M, Liu C, Gilles M, Glaab E, Barnsley K, Iyengar SM, Ondrechen MJ, Haupt VJ, Kaiser F, Schroeder M, Pugliese L, Albani S, Athanasiou C, Beccari A, Carloni P, D'Arrigo G, Gianquinto E, Goßen J, Hanke A, Joseph BP, Kokh DB, Kovachka S, Manelfi C, Mukherjee G, Muñiz-Chicharro A, Musiani F, Nunes-Alves A, Paiardi G, Rossetti G, Sadiq SK, Spyrakis F, Talarico C, Tsengenes A, Wade R, Copeland C, Gaiser J, Olson DR, Roy A, Venkatraman V, Wheeler TJ, Arthanari H, Blaschitz K, Cespugli M, Durmaz V, Fackeldey K, Fischer PD, Gorgulla C, Gruber C, Gruber K, Hetmann M, Kinney JE, Das KMP, Pandita S, Singh A, Steinkellner G, Tesseyre G, Wagner G, Wang Z, Yust RJ, Druzhilovskiy DS, Filimonov D, Pogodin PV, Poroikov V, Rudik AV, Stolbov LA, Veselovsky AV, Rosa MD, Simone GD, Gulotta MR, Lombino J, Mekni N, Perricone U, Casini A, Embree A, Gordon DB, Lei D, Pratt K, Voigt CA, Chen K, Jacob Y, Krischuns T, Lafaye P, Zettor A, Rodríguez ML, White KM, Fearon D, Delft Fv, Walsh MA, Horvath D, Brooks CL, Falsafi B, Ford B, García-Sastre A, Lee SY, Naffakh N, Varnek A, Klambauer G, Hermans TM (2024). A community effort in SARS‐CoV‐2 drug discovery, Molecular Informatics 43(1),e202300262 1723
• Dimitriadis T, Gneiting T, Jordan AI, Vogel P (2024). Evaluating probabilistic classifiers: The triptych, International Journal of Forecasting, published online 1735
• Maltsev K, Schneider F, Röpke F, Jordan AI, Qadir GA, Kerzendorf W, Riedmiller K, Smagt Pvd (2024). Scalable stellar evolution forecasting – Deep learning emulation versus hierarchical nearest-neighbor interpolation, A&A 681:A86 1794
• D'Anna F, Jareborg N, Jetten M, Ahokas M, Alper P, Andrews R, Bösl K, D’Altri T, Faria D, Fatima N, Fuchs S, Garrard C, Gu W, Heil KF, Kallberg Y, Licciulli F, Lübke N, Melo AMP, Mičetić I, Oliveira J, Oulas A, Palagi PM, Poterlowicz K, Perez-Sitja X, Ruch P, Sansone S, Schnitzer H, Gelder Cv, Vergoulis T, Wibberg D, Wittig U, Leskošek B, Vondrasek J, Andrabi M (2024). A research data management (RDM) community for ELIXIR, F1000Res 13:230 1829