HITS Publications

2023

• Chai H, Strube M (2023). Investigating multilingual coreference resolution by universal annotations, Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2023, Singapore, 6-10 December 2023, pp.10010-10024 1725
• Fatima M, Kolber T, Markert K, Strube M (2023). SimCSum: Joint learning of simplification and cross-lingual summarization for cross-lingual science journalism, Proceedings of the Forth Workshop on New Frontiers in Summarization. Singapore, 6 December 2023, pp.24-40. 1727
• Abaza H, Shutsko A, Golebiewski M, Klopfenstein S, Schmidt CO, Vorisek C, Brünings-Kuppe C, Clemens V, Darms J, Hanß S, Intemann T, Jannasch F, Kasbohm E, Lindstädt B, Löbe M, Orban E, Perrar I, Peters M, Sax U, Schulze M, Schupp C, Schwarz F, Schwedhelm C, Strathmann S, Waltemath D, Wünsche H, Zeleke A (2023). The NFDI4Health Metadata Schema (V3_3) 1780
• Zaunseder E, Mütze U, Garbade SF, Haupt S, Kölker S, Heuveline V (2023). Deep Learning and Explainable Artificial Intelligence for Improving Specificity and Detecting Metabolic Patterns in Newborn Screening, 2023 IEEE Symposium Series on Computational Intelligence (SSCI),pp.1566-1571,IEEE 1799
• Machmeier S, Hoecker M, Heuveline V (2023). Explainable Artificial Intelligence for Improving a Session-Based Malware Traffic Classification with Deep Learning, 2023 IEEE Symposium Series on Computational Intelligence (SSCI),pp.850-855,IEEE 1805
• Rahman MT, Koski MK, Panecka-Hofman J, Schmitz W, Kastaniotis AJ, Wade RC, Wierenga RK, Hiltunen JK, Autio KJ (2023). An engineered variant of MECR reductase reveals indispensability of long-chain acyl-ACPs for mitochondrial respiration, Nat Commun 14(1),619 1583
• Amaro-Seoane P, Andrews J, Sedda MA, Askar A, Baghi Q, Balasov R, Bartos I, Bavera SS, Bellovary J, Berry CP, Berti E, Bianchi S, Blecha L, Blondin S, Bogdanović T, Boissier S, Bonetti M, Bonoli S, Bortolas E, Breivik K, Capelo PR, Caramete L, Cattorini F, Charisi M, Chaty S, Chen X, Chruślińska M, Chua AJ, Church R, Colpi M, D’Orazio D, Danielski C, Davies MB, Dayal P, Rosa AD, Derdzinski A, Destounis K, Dotti M, Dutan I, Dvorkin I, Fabj G, Foglizzo T, Ford S, Fouvry J, Franchini A, Fragos T, Fryer C, Gaspari M, Gerosa D, Graziani L, Groot P, Habouzit M, Haggard D, Haiman Z, Han W, Istrate A, Johansson PH, Khan FM, Kimpson T, Kokkotas K, Kong A, Korol V, Kremer K, Kupfer T, Lamberts A, Larson S, Lau M, Liu D, Lloyd-Ronning N, Lodato G, Lupi A, Ma C, Maccarone T, Mandel I, Mangiagli A, Mapelli M, Mathis S, Mayer L, McGee S, McKernan B, Miller MC, Mota DF, Mumpower M, Nasim SS, Nelemans G, Noble S, Pacucci F, Panessa F, Paschalidis V, Pfister H, Porquet D, Quenby J, Ricarte A, Röpke FK, Regan J, Rosswog S, Ruiter A, Ruiz M, Runnoe J, Schneider R, Schnittman J, Secunda A, Sesana A, Seto N, Shao L, Shapiro S, Sopuerta C, Stone NC, Suvorov A, Tamanini N, Tamfal T, Tauris T, Temmink K, Tomsick J, Toonen S, Torres-Orjuela A, Toscani M, Tsokaros A, Unal C, Vázquez-Aceves V, Valiante R, Putten Mv, Roestel Jv, Vignali C, Volonteri M, Wu K, Younsi Z, Yu S, Zane S, Zwick L, Antonini F, Baibhav V, Barausse E, Rivera AB, Branchesi M, Branduardi-Raymont G, Burdge K, Chakraborty S, Cuadra J, Dage K, Davis B, Mink SEd, Decarli R, Doneva D, Escoffier S, Gandhi P, Haardt F, Lousto CO, Nissanke S, Nordhaus J, O’Shaughnessy R, Zwart SP, Pound A, Schussler F, Sergijenko O, Spallicci A, Vernieri D, Vigna-Gómez A (2023). Astrophysics with the Laser Interferometer Space Antenna, Living Rev Relativ 26(1),2 1696
• Röpke FK, Marco OD (2023). Simulations of common-envelope evolution in binary stellar systems: physical models and numerical techniques, Living Rev Comput Astrophys 9(1),2 1697
• Mukesh S, Mukherjee G, Singh R, Steenbuck N, Demidova C, Joshi P, Sangamwar AT, Wade RC (2023). Comparative analysis of drug-salt-polymer interactions by experiment and molecular simulation improves biopharmaceutical performance, Commun Chem 6(1),201 1719
• Ernst M, Evans JD, Gryn'ova G (2023). Host–guest interactions in framework materials: Insight from modeling, Chemical Physics Reviews 4(4),041303 1729
• Bodensteiner J, Sana H, Dufton P, Wang C, Langer N, Banyard G, Mahy L, Koter Ad, Mink Sd, Evans C, Götberg Y, Hénault-Brunet V, Patrick L, Schneider F (2023). The young massive SMC cluster NGC 330 seen by MUSE. III. Stellar parameters and rotational velocities, A&A 680:A32 1753
• Møller P, Seppälä TT, Ahadova A, Crosbie EJ, Holinski-Feder E, Scott R, Haupt S, Möslein G, Winship I, Broeke SWB, Kohut KE, Ryan N, Bauerfeind P, Thomas LE, Evans DG, Aretz S, Sijmons RH, Half E, Heinimann K, Horisberger K, Monahan K, Engel C, Cavestro GM, Fruscio R, Abu-Freha N, Zohar L, Laghi L, Bertario L, Bonanni B, Tibiletti MG, Lino-Silva LS, Vaccaro C, Valle AD, Rossi BM, Silva LAd, Nascimento ILdO, Rossi NT, Dębniak T, Mecklin J, Bernstein I, Lindblom A, Sunde L, Nakken S, Heuveline V, Burn J, Hovig E, Kloor M, Sampson JR, Dominguez-Valentin M (2023). Dominantly inherited micro-satellite instable cancer – the four Lynch syndromes – an EHTG, PLSD position statement, Hered Cancer Clin Pract 21(1),19 1802
• Trujillo-Gomez S, Kruijssen JMD, Pfeffer J, Reina-Campos M, Crain RA, Bastian N, Cabrera-Ziri I (2023). In situ or accreted? Using deep learning to infer the origin of extragalactic globular clusters from observables, Monthly Notices of the Royal Astronomical Society 526(4):5735-5755 1888
• Wahl N, Morel B, Stamatakis A (2023). Approximating Phylogenetic Tree Distributions with Distance-Based Methods (Master's Thesis) 1914
• Brockhaus EK, Wolffram D, Stadler T, Osthege M, Mitra T, Littek JM, Krymova E, Klesen AJ, Huisman JS, Heyder S, Helleckes LM, an der Heiden M, Funk S, Abbott S, Bracher J (2023). Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany, PLOS Computational Biology, 19(11):e1011653 1811
• Glaser M, Ritterhof J, Most P, Wade RC (2023). Wird KI neue Medikamente gegen Herzkrankheiten hervorbringen?, Aktuelle Kardiologie 12(06):450-458 1736
• Nießner J (2023). Computational Models of Hen Egg White Lysozyme Physisorption to Silica- and Mica-like Surfaces (Master's Thesis), Physics, Department of Physics and Astronomy, Ruprecht-Karls University, Heidelberg 1759
• Linciano P, Quotadamo A, Luciani R, Santucci M, Zorn KM, Foil DH, Lane TR, Silva ACd, Santarem N, Moraes CB, Freitas-Junior L, Wittig U, Mueller W, Tonelli M, Ferrari S, Venturelli A, Gul S, Kuzikov M, Ellinger B, Reinshagen J, Ekins S, Costi MP (2023). High-Throughput Phenotypic Screening and Machine Learning Methods Enabled the Selection of Broad-Spectrum Low-Toxicity Antitrypanosomatidic Agents., J Med Chem. 2023 Nov 3. doi: 10.1021/acs.jmedchem.3c01322. 1734
• Leidi G, Andrassy R, Higl J, Edelmann PVF, Röpke FK (2023). Turbulent dynamo action and its effects on the mixing at the convective boundary of an idealized oxygen-burning shell, A&A 679:A132 1824
• Covelo-Paz A, Themeßl N, Espinoza-Rojas F, Hekker S (2023). New red giants in NGC 6791 and NGC 6819 using Kepler superstamps, A&A 679:A134 1864
• Athanasiou C (2023). Modeling of mechanistic effects of neurotrophin modulators (Doctoral Thesis), Faculty of Biosciences, Ruprecht-Karls University, Heidelberg 1760
• Zaunseder E, Mütze U, Okun JG, Hoffmann GF, Kölker S, Heuveline V, Thiele I (2023). Personalised metabolic whole-body models for newborns and infants predict growth and biomarkers of inherited metabolic diseases, biorxiv;2023.10.20.563364v1,[Preprint] 1800
• Buhr Sd, Gräter F (2023). Myristoyl’s dual role in allosterically regulating and localizing Abl kinase, eLife 12:e85216. 1556
• Rasheeda Satheesh A, Knippertz P, Fink AH, Walz E, Gneiting T (2023). Sources of predictability of synoptic‐scale rainfall during the West African summer monsoon, Quarterly Journal of the Royal Meteorological Society, 149(757):3721–3737 1720
• Machmeier S, Trageser M, Buchwald M, Heuveline V (2023). A Generalizable Approach for Network Flow Image Representation for Deep Learning, 2023 7th Cyber Security in Networking Conference (CSNet),pp.57-61,IEEE 1804
• Remme R, Kaczun T, Scheurer M, Dreuw A, Hamprecht FA (2023). KineticNet: Deep learning a transferable kinetic energy functional for orbital-free density functional theory, The Journal of Chemical Physics 159(14),144113 1822
• Gryn’ova G (2023). Crafting molecular architectures with guided diffusion, Nat Comput Sci 1717
• Morel B, Williams TA, Stamatakis A, Szöllősi GJ (2023). AleRax: A tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss, biorxiv;2023.10.06.561091v2,[Preprint] 1751
• Herrera-Rodríguez AM, Dasanna AK, Daday C, Cruz-Chú ER, Aponte-Santamaría C, Schwarz US, Gräter F (2023). The role of flow in the self-assembly of dragline spider silk proteins, Biophysical Journal 1715
• Ehlert C, Piras A, Gryn’ova G (2023). CO 2 on Graphene: Benchmarking Computational Approaches to Noncovalent Interactions, ACS Omega 8(39):35768-35778 1716
• Togkousidis A, Kozlov OM, Haag J, Höhler D, Stamatakis A (2023). Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty, Molecular Biology and Evolution 40(10),msad227 1750
• Bracher J, Rüter L, Krüger F, Lerch S, Schienle M (2023). Direction augmentation in the evaluation of armed conflict predictions, International Interactions, 49(6):989–1004 1810
• Zhao W, López F, Riestenberg JM, Strube M, Taha D, Trettel S (2023). Modeling graphs beyond hyperbolic: Graph neural networks in symmetric positive definite matrices, Proceedings of Machine Learning and Knowledge Discovery in Databases: Research Track - European Conference. ECML PKDD, Turin, Italy, 18-22 September 2023, pages 122-139 1724
• Ertini K, Folatelli G, Martinez L, Bersten M, Anderson J, Ashall C, Baron E, Bose S, Brown P, Burns C, DerKacy J, Ferrari L, Galbany L, Hsiao E, Kumar S, Lu J, Mazzali P, Morrell N, Orellana M, Pessi P, Phillips M, Piro A, Polin A, Shahbandeh M, Shappee B, Stritzinger M, Suntzeff N, Tucker M, Elias-Rosa N, Kuncarayakti H, Gutiérrez C, Kozyreva A, Müller-Bravo T, Chen T-, Hinkle J, Payne A, Székely P, Szalai T, Barna B, Könyves-Tóth R, Bánhidi D, Bı́ró I, Csányi I, Kriskovits L, Pál A, Szabó Z, Szakáts R, Vida K, Vinkó J, Gromadzki M, Harvey L, Nicholl M, Paraskeva E, Young D, Englert B (2023). SN 2021gno: a Calcium-rich transient with double-peaked light curves, Monthly Notices of the Royal Astronomical Society,stad2705 1694
• Fluck J, Golebiewski M, Darms J (2023). Data Publication for Personalised Health Data, Proc Conf Res Data Infrastr 1 1796
• Meineke F, Golebiewski M, Hu X, Kirsten T, Löbe M, Klammt S, Sax U, Müller W (2023). NFDI4Health Local Data Hubs for Finding and Accessing Health Data, Proc Conf Res Data Infrastr 1 1797
• Sax U, Henke C, Dräger C, Bender T, Kuntz A, Golebiewski M, Ulrich H, Löbe M (2023). Provenance Core Data Set: A Minimal Information Model for Data Provenance in Biomedical Research, Proc Conf Res Data Infrastr 1 1837
• Roussaki M, Magoulas GE, Fotopoulou T, Santarem N, Barrias E, Pöhner I, Luelmo S, Afroudakis P, Georgikopoulou K, Nevado PT, Eick J, Bifeld E, Corral MJ, Jiménez-Antón MD, Ellinger B, Kuzikov M, Fragiadaki I, Scoulica E, Gul S, Clos J, Prousis KC, Torrado JJ, Alunda JM, Wade RC, Souza Wd, Silva ACd, Calogeropoulou T (2023). Design, synthesis and biological evaluation of antiparasitic dinitroaniline-ether phospholipid hybrids, Bioorganic Chemistry 138:106615 1677
• Collins CE, Sim SA, Shingles LJ, Gronow S, Röpke FK, Pakmor R, Seitenzahl IR, Kromer M (2023). Helium as a signature of the double detonation in Type Ia supernovae, Monthly Notices of the Royal Astronomical Society 524(3):4447-4454 1698
• Ewers I, Rajter L, Czech L, Mahé F, Stamatakis A, Dunthorn M (2023). Interpreting phylogenetic placements for taxonomic assignment of environmental DNA, J Eukaryotic Microbiology 70(5),e12990 1748
• Bernini-Peron M, Marcolino W, Sander A, Bouret J-, Ramachandran V, Saling J, Schneider F, Oskinova L, Najarro F (2023). Clumping and X-rays in cooler B supergiant stars, A&A 677:A50 1941
• Bosse NI, Abbott S, Cori A, van Leeuwen E, Bracher J, Funk S (2023). Scoring epidemiological forecasts on transformed scales, PLOS Computational Biology, 19(8):e1011393 1721
• Tarnow M (2023). Optimization of a Drug: Polymer Formulation Exploiting a Computational Approach based on Molecular Dynamics Simulations (Bachelor's Thesis), Molecular Biotechnology, Faculty of Engineering Sciences, Ruprecht-Karls University, Heidelberg 1762
• Viviani LG, Kokh DB, Wade RC, Amaral AT (2023). Molecular Dynamics Simulations of the Human Ecto-5′-Nucleotidase (h-ecto-5′-NT, CD73): Insights into Protein Flexibility and Binding Site Dynamics, J. Chem. Inf. Model. 63(15):4691-4707 1690
• Abaza H, Shutsko A, Golebiewski M, Klopfenstein S, Schmidt CO, Vorisek C, COVID-19 NTF, NFDI4Health , Brünings-Kuppe C, Clemens V, Darms J, Hanß S, Intemann T, Jannasch F, Kasbohm E, Lindstädt B, Löbe M, Orban E, Perrar I, Peters M, Sax U, Schulze M, Schupp C, Schwarz F, Schwedhelm C, Strathmann S, Waltemath D, Wünsche H, Zeleke A (2023). Metadata schema of the NFDI4Health and the NFDI4Health Task Force COVID-19 (V3_2) 1779
• Wolffram D, Abbott S, an der Heiden M, Funk S, Günther F, Hailer D, Heyder S, Hotz T, van de Kassteele J, Küchenhoff H, Müller-Hansen S, Syliqi D, Ullrich A, Weigert M, Schienle M, Bracher J (2023). Collaborative nowcasting of COVID-19 hospitalization incidences in Germany, PLOS Computational Biology, 19(8):e1011394 1722
• Fedorov R, Gryn’ova G (2023). Unlocking the Potential: Predicting Redox Behavior of Organic Molecules, from Linear Fits to Neural Networks, J. Chem. Theory Comput. 19(15):4796-4814 1685
• Srivastav S, Moore T, Nicholl M, Magee M, Smartt S, Fulton M, Sim S, Pollin J, Galbany L, Inserra C, Kozyreva A, Moriya TJ, Callan F, Sheng X, Smith K, Sommer J, Anderson J, Deckers M, Gromadzki M, Müller-Bravo T, Pignata G, Rest A, Young D (2023). Unprecedented early flux excess in the hybrid 02es-like type Ia supernova 2022ywc indicates interaction with circumstellar material, arXiv e-prints:arXiv:2308.06019 1695
• Noll A, Deheuvels S (2023). Impact of central mixing scheme and nuclear reaction network on the extent of convective cores, A&A 676:A70 1703
• Bloot S, Miguel Y, Bazot M, Howard S (2023). Exoplanet interior retrievals: core masses and metallicities from atmospheric abundances, Monthly Notices of the Royal Astronomical Society 523(4):6282-6292 1708
• Ganna (Anya) Gryn’ova, Helvetica Chimica Acta 106(8),e202300093 1718
• Golebiewski GMM (2023). First Draft of the VHT Roadmap 1821
• Liu Z, Röpke FK, Han Z (2023). Type Ia Supernova Explosions in Binary Systems: A Review, Res. Astron. Astrophys. 23(8):082001 1699
• Franz F, Tapia-Rojo R, Winograd-Katz S, Boujemaa-Paterski R, Li W, Unger T, Albeck S, Aponte-Santamaría C, Garcia-Manyes S, Medalia O, Geiger B, Gräter F (2023). Allosteric activation of vinculin by talin, Nat Commun 14, 4311 1505
• Liu W, Fan Y, Strube M (2023). HITS at DISRPT 2023: Discourse segmentation, connective detection, and relation classification, Proceedings of the 3rd Shared Task on Discourse Relation Parsing and Treebanking (DISRPT 2023), Toronto, Ontario, Canada, 14 July 2023, pages 43–49 1726
• Braud C, Hardmeier C, Li JJ, Loaciga S, Strube M, Zeldes A (2023). Proceedings of the 4th Workshop on Computational Approaches to Discourse, Proceedings of the 4th Workshop on Computational Approaches to Discourse, Toronto, Ontaria, Canada, 13-14July 2023 1733
• Trost J, Haag J, Höhler D, Jacob L, Stamatakis A, Boussau B (2023). Simulations of sequence evolution: how (un)realistic they are and why, biorxiv;2023.07.11.548509v2,[Preprint] 1747
• Fatima M, Strube M (2023). Cross-lingual Science Journalism: Select, Simplify and Rewrite Summaries for Non-expert Readers, Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics, Toronto, Ontario, Canada, July 2023, pp. 1843-1861 1678
• Liu W, Fu X, Strube M (2023). Modeling Structural Similarities between Documents for Coherence Assessment with Graph Convolutional Networks, Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics, Toronto, Ontario, Canada, July 2023, pp. 7792-7808 1679
• Liu W, Strube M (2023). Annotation-Inspired Implicit Discourse Relation Classification with Auxiliary Discourse Connective Generation, Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics, Toronto, Ontario, Canada, July 2023, pp. 15696-15712 1680
• Ray EL, Brooks LC, Bien J, Biggerstaff M, Bosse NI, Bracher J, Cramer EY, Funk S, Gerding A, Johansson MA, Rumack A, Wang Y, Zorn M, Tibshirani RJ, Reich NG (2023). Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States, International Journal of Forecasting, 39(3):1366–1383 1691
• Vink JS, Mehner A, Crowther PA, Fullerton A, Garcia M, Martins F, Morrell N, Oskinova LM, St-Louis N, ud-Doula A, Sander AAC, Sana H, Bouret J-, Kubátová B, Marchant P, Martins LP, Wofford A, Loon JTv, Telford OG, Götberg Y, Bowman DM, Erba C, Kalari VM, Abdul-Masih M, Alkousa T, Backs F, Barbosa CL, Berlanas SR, Bernini-Peron M, Bestenlehner JM, Blomme R, Bodensteiner J, Brands SA, Evans CJ, David-Uraz A, Driessen FA, Dsilva K, Geen S, Gómez-González VMA, Grassitelli L, Hamann W-, Hawcroft C, Herrero A, Higgins ER, Hillier DJ, Ignace R, Istrate AG, Kaper L, Kee ND, Kehrig C, Keszthelyi Z, Klencki J, Koter Ad, Kuiper R, Laplace E, Larkin CJK, Lefever RR, Leitherer C, Lennon DJ, Mahy L, Apellániz JM, Maravelias G, Marcolino W, McLeod AF, Mink SEd, Najarro F, Oey MS, Parsons TN, Pauli D, Pedersen MG, Prinja RK, Ramachandran V, Ramírez-Tannus MC, Sabhahit GN, Schootemeijer A, Serantes SR, Shenar T, Stringfellow GS, Sudnik N, Tramper F, Wang L (2023). X-Shooting ULLYSES: Massive stars at low metallicity. I. Project description, A&A 675:A154 1769
• Häuser L, Haag J, Stamatakis A (2023). Quantitative Analysis and Characterization of Natural Language Evolution Datasets (Master's Thesis) 1916
• Schneider FR, Podsiadlowski P, Laplace E (2023). Bimodal Black Hole Mass Distribution and Chirp Masses of Binary Black Hole Mergers, ApJL 950(2):L9 1754
• Kirschner M, Golebiewski M, Moser H, consortium E, 5 I2 (2023). ISO/TS 9491-1:2023 Biotechnology — Predictive computational models in personalized medicine research — Part 1: Constructing, verifying and validating models, ISO/TS 9491-1:2023 Biotechnology — Predictive computational models in personalized medicine research — Part 1: Constructing, verifying and validating models. International Organization for Standardization (ISO), Geneva, Switzerland. https://www.iso.org/standard/83516.html 1668
• Llenga S, Gryn’ova G (2023). Matrix of orthogonalized atomic orbital coefficients representation for radicals and ions, The Journal of Chemical Physics 158(21),214116 1682
• Gomez GM, D’Arrigo G, Sanchez CP, Berger F, Wade RC, Lanzer M (2023). PfCRT mutations conferring piperaquine resistance in falciparum malaria shape the kinetics of quinoline drug binding and transport, PLoS Pathog 19(6):e1011436 1683
• Lahén N, Naab T, Kauffmann G, Szécsi D, Hislop JM, Rantala A, Kozyreva A, Walch S, Hu C (2023). Formation of star clusters and enrichment by massive stars in simulations of low-metallicity galaxies with a fully sampled initial stellar mass function, Monthly Notices of the Royal Astronomical Society 522(2):3092-3116 1664
• Kuruwita RL, Haugbølle T (2023). The contribution of binary star formation via core fragmentation on protostellar multiplicity, A&A 674:A196 1765
• Resin J (2023). From classification accuracy to proper scoring rules: Elicitability of probabilistic top list predictions, Journal of Machine Learning Research, 24(173):1–21 1681
• Ernst M, Gryn'ova G (2023). Engineering Host–Guest Interactions in Organic Framework Materials for Drug Delivery, Helvetica Chimica Acta,e202300013 1675
• Schulz B (2023). Statistical postprocessing of numerical weather prediction forecasts using machine learning (Doctoral Thesis), PhD Thesis, Faculty of Mathematics, Karlsruhe Institute of Technology 2031
• Tiwari DD, Hoffmann N, Didi K, Deshpande S, Ghosh S, Nguyen TVN, Raman K, Hermjakob H, Sheriff R (2023). BioModelsML: Building a FAIR and reproducible collection of machine learning models in life sciences and medicine for easy reuse, biorxiv;2023.05.22.540599v1,[Preprint] 1714
• Bettisworth B, Jordan AI, Stamatakis A (2023). Phylourny: Efficiently calculating elimination tournament win probabilities via phylogenetic methods, Statistics and Computing, 33(4):80 2039
• Farmer R, Laplace E, Ma J, Mink SEd, Justham S (2023). Nucleosynthesis of Binary-stripped Stars, ApJ 948(2):111 1767
• Abaza H, Shutsko A, Golebiewski M, Klopfenstein S, Schmidt CO, Vorisek C, COVID-19 NTF, NFDI4Health , Brünings-Kuppe C, Clemens V, Darms J, Hanß S, Intemann T, Jannasch F, Kasbohm E, Lindstadt B, Lobe M, Orban E, Perrar I, Peters M, Sax U, Schulze M, Schupp C, Schwarz F, Schwedhelm C, Strathmann S, Waltemath D, Wünsche H, Zeleke AA (2023). Metadata schema of the NFDI4Health and the NFDI4Health Task Force COVID-19 (V3_1) 1778
• Zhao W, Strube M, Eger S (2023). DiscoScore: Evaluating text generation with BERT and discourse coherence, Proceedings of the 17th Conference of the European Chapter of the Association for Computational Linguistics, Dubrovnik, Croatia, May 2023, pp.3865-3883 1588
• Resin J (2023). A simple algorithm for exact multinomial tests, Journal of Computational and Graphical Statistics, 32(2):539–550 1504
• Muñiz‐Chicharro A, Votapka LW, Amaro RE, Wade RC (2023). Brownian dynamics simulations of biomolecular diffusional association processes, WIREs Comput Mol Sci 13(3),e1649 1555
• Schulze S, Fransson C, Kozyreva A, Chen T, Yaron O, Jerkstrand A, Gal-Yam A, Sollerman J, Yan L, Kangas T, Leloudas G, Omand CM, Smartt SJ, Yang Y, Nicholl M, Sarin N, Yao Y, Brink TG, Sharon A, Rossi A, Chen P, Chen Z, Cikota A, De K, Drake AJ, Filippenko AV, Fremling C, Freour L, Fynbo JPU, Ho AY, Inserra C, Irani I, Kuncarayakti H, Lunnan R, Mazzali P, Ofek EO, Palazzi E, Perley DA, Pursiainen M, Rothberg B, Shingles LJ, Smith K, Taggart K, Tartaglia L, Zheng W, Anderson JP, Cassara L, Christensen E, Djorgovski SG, Galbany L, Gkini A, Graham MJ, Gromadzki M, Groom SL, Hiramatsu D, Howell DA, Kasliwal MM, McCully C, Müller-Bravo TE, Paiano S, Paraskeva E, Pessi PJ, Polishook D, Rau A, Rigault M, Rusholme B (2023). 1100 Days in the Life of the Supernova 2018ibb – the Best Pair-Instability Supernova Candidate, to date, arXiv e-prints:arXiv:2305.05796 1661
• Schulze S, Fransson C, Kozyreva A, Chen T, Yaron O, Jerkstrand A, Gal-Yam A, Sollerman J, Yan L, Kangas T, Leloudas G, Omand CM, Smartt SJ, Yang Y, Nicholl M, Sarin N, Yao Y, Brink TG, Sharon A, Rossi A, Chen P, Chen Z, Cikota A, De K, Drake AJ, Filippenko AV, Fremling C, Freour L, Fynbo JP, Ho AY, Inserra C, Irani I, Kuncarayakti H, Lunnan R, Mazzali P, Ofek EO, Palazzi E, Perley DA, Pursiainen M, Rothberg B, Shingles LJ, Smith K, Taggart K, Tartaglia L, Zheng W, Anderson JP, Cassara L, Christensen E, Djorgovski SG, Galbany L, Gkini A, Graham MJ, Gromadzki M, Groom SL, Hiramatsu D, Howell DA, Kasliwal MM, McCully C, Müller-Bravo TE, Paiano S, Paraskeva E, Pessi PJ, Polishook D, Rau A, Rigault M, Rusholme B (2023). 1100 Days in the Life of the Supernova 2018ibb – the Best Pair-Instability Supernova Candidate, to date, arXiv e-prints:arXiv:2305.05796 1663
• Dimitriadis G, Maguire K, Karambelkar VR, Lebron RJ, Liu C, Kozyreva A, Miller AA, Ridden-Harper R, Anderson JP, Chen T, Coughlin M, Valle MD, Drake A, Galbany L, Gromadzki M, Groom SL, Gutiérrez CP, Ihanec N, Inserra C, Johansson J, Müller-Bravo TE, Nicholl M, Polin A, Rusholme B, Schulze S, Sollerman J, Srivastav S, Taggart K, Wang Q, Yang Y, Young DR (2023). SN 2021zny: an early flux excess combined with late-time oxygen emission suggests a double white dwarf merger event, Monthly Notices of the Royal Astronomical Society 521(1):1162-1183 1665
• Bétrisey J, Eggenberger P, Buldgen G, Benomar O, Bazot M (2023). Testing angular momentum transport processes with asteroseismology of solar-type main-sequence stars, A&A 673:L11 1710
• Srivastava A, Rastogi A, Rao A, ... , Strube M, .. , and_another_400_something_other_authors (2023). Beyond the imitation game: Quantifying and extrapolating the capabilities of language models, Transactions of Machine Learning Research. Published 05/2023 1732
• Togkousidis A, Chernomor O, Stamatakis A (2023). Parallel Inference of Phylogenetic Stands with Gentrius, 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW),pp.139-148,IEEE 1746
• Gerstner P, Heuveline V (2023). Finite element approximation of dielectrophoretic force driven flow problems, ESAIM: M2AN 57(3):1691-1729 1806
• Aguila AL, Jayme A, Montaña-Brown N, Heuveline V, Altmann A (2023). Multi-view-AE: A Python package for multi-view autoencoder models, JOSS 8(85):5093 1809
• Haupt S (2023). Mathematical modeling of Lynch syndrome carcinogenesis (Doctoral Thesis) 1658
• Resin J (2023). Model diagnostics meets forecast evaluation: Goodness-of-fit, calibration, and related topics (Doctoral Thesis), PhD Thesis, Faculty of Mathematics, Karlsruhe Institute of Technology 2030
• Wittner R, Holub P, Mascia C, Frexia F, Müller H, Plass M, Allocca C, Betsou F, Burdett T, Cancio I, Chapman A, Chapman M, Courtot M, Curcin V, Eder J, Elliot M, Exter K, Goble C, Golebiewski M, Kisler B, Kremer A, Leo S, Lin‐Gibson S, Marsano A, Mattavelli M, Moore J, Nakae H, Perseil I, Salman A, Sluka J, Soiland‐Reyes S, Strambio‐De‐Castillia C, Sussman M, Swedlow JR, Zatloukal K, Geiger J (2023). Toward a common standard for data and specimen provenance in life sciences, Learning Health Systems,e10365 1655
• Nunez FP, Gianniotis N, Polsterer K (2023). A Gaussian process cross-correlation approach to time-delay estimation in active galactic nuclei, A&A 1657
• Meyer J, Alpay A, Hack S, Fröning H, Heuveline V (2023). Implementation Techniques for SPMD Kernels on CPUs, International Workshop on OpenCL,pp.1-12,ACM 1803
• Alpay A, Heuveline V (2023). One Pass to Bind Them: The First Single-Pass SYCL Compiler with Unified Code Representation Across Backends, International Workshop on OpenCL,pp.1-12,ACM 1808
• Rennekamp B, Karfusehr C, Kurth M, Ünal A, Riedmiller K, Gryn’ova G, Hudson DM, Gräter F (2023). Collagen breaks at weak sacrificial bonds taming its mechanoradicals, Nat Commun 14, 2075 (2023). 1540
• Kutzki F, Butera D, Lay AJ, Maag D, Chiu J, Woon H, Kubař T, Elstner M, Aponte-Santamaría C, Hogg PJ, Gräter F (2023). Disulfide Bond Reduction and Exchange in von-Willebrand-Factor’s C4-Domain Undermines Platelet Binding, Journal of Thrombosis and Haemostasis (2023). 1651
• Cabezudo AC, Athanasiou C, Tsengenes A, Wade RC (2023). Scaling Protein–Water Interactions in the Martini 3 Coarse-Grained Force Field to Simulate Transmembrane Helix Dimers in Different Lipid Environments, J. Chem. Theory Comput. 19(7):2109-2119 1635
• Dupuy A, Santamaría CA, Yeheskel A, Hortle E, Oehlers SH, Gräter F, Hogg PJ, Passam FH, Chiu J (2023). Mechano-Redox Control of Macrophage-1 Antigen De-Adhesion From ICAM-1 (Intercellular Adhesion Molecule 1) by Protein Disulfide Isomerase Promotes Directional Movement Under Flow, Circulation Research (2023). 1652
• Montisci F, Ernst M, Macchi P (2023). Experimental and Computational Study on the Effects of High Pressure on the Crystal Structure of Boron Nitrilotriacetate, Crystal Growth & Design 23(4):2745-2754 1766
• Erozan A, Lösel P, Heuveline V, Weinhardt V (2023). ACSEG: AUTOMATED 3D CYTOPLASM SEGMENTATION IN SOFT X-RAY TOMOGRAPHY 1807
• Kurth M, Barayeu U, Gharibi H, Kuzhelev A, Riedmiller K, Zilke J, Noack K, Denysenkov V, Kappl R, Prisner TF, Zubarev RA, Dick TP, Gräter F (2023). DOPA Residues Endow Collagen with Radical Scavenging Capacity, Angew. Chem. Int. Ed. 2023, e202216610 1566
• Dimitriadis T, Liu X, Schnaitmann J (2023). Encompassing tests for value at risk and expected shortfall multistep forecasts based on inference on the boundary, Journal of Financial Econometrics, 21(2):412–444 1381
• Hoga Y, Dimitriadis T (2023). On testing equal conditional predictive ability under measurement error, Journal of Business & Economic Statistics, 41(2):364–376 1439
• Djorgovski S, Mahabal A, Graham M, Polsterer K, Krone-Martins A (2023). Applications of AI in Astronomy 1622
• Howard S, Guillot T, Bazot M, Miguel Y, Stevenson DJ, Galanti E, Kaspi Y, Hubbard WB, Militzer B, Helled R, Nettelmann N, Idini B, Bolton S (2023). Jupiter’s interior from Juno: Equation-of-state uncertainties and dilute core extent, A&A 672:A33 1711
• Morán-Fraile J, Schneider FR, Röpke FK, Ohlmann ST, Pakmor R, Soultanis T, Bauswein A (2023). Gravitational wave emission from dynamical stellar interactions, A&A 672:A9 1755
• Dudas D, Wittig U, Rey M, Weidemann A, Muller W (2023). Improved insights into the SABIO-RK database via visualization., Database (Oxford). 2023 Mar 31;2023:baad011. doi: 10.1093/database/baad011. 1656
• Golebiewski GMM (2023). Vision for the Virtual Human Twin and Roadmap Outline 1820
• Diedrich L, Brosz M, Abele T, Steinke S, Gräter F, Göpfrich K, Aponte-Santamaría C (2023). Energetics and kinetics of membrane permeation of photoresists for bioprinting, bioRxiv 1676
• Perez S, Makshakova O, Angulo J, Bedini E, Bisio A, Paz JLd, Fadda E, Guerrini M, Hricovini M, Hricovini M, Lisacek F, Nieto PM, Pagel K, Pairardi G, Richter R, Samsonov SA, Vivès RA, Nikitovic D, Blum SR (2023). Glycosaminoglycans: What Remains To Be Deciphered?, JACS Au 3(3):628-656 1636
• Tempest KI, Craig GC, Brehmer JR (2023). Convergence of forecast distributions in a 100,000‐member idealised convective‐scale ensemble, Quarterly Journal of the Royal Meteorological Society, 149(752):677–702 1569
• Williams TA, Davin AA, Morel B, Szánthó LL, Spang A, Stamatakis A, Hugenholtz P, Szöllősi GJ (2023). The power and limitations of species tree-aware phylogenetics, biorxiv;2023.03.17.533068v1,[Preprint] 1745
• Ahadova A, Stenzinger A, Seppälä T, Hüneburg R, Kloor M, Bläker H, Wittemann J, Endris V, Gerling L, Bertram V, Neumuth MT, Witt J, Graf S, Kristiansen G, Hommerding O, Haupt S, Zeilmann A, Heuveline V, Kazdal D, Gebert J, Doeberitz MvK, Mecklin J, Nattermann J (2023). A “two-in-one hit” model of shortcut carcinogenesis in MLH1 Lynch syndrome carriers, Gastroenterology 1639
• Gneiting T, Wolffram D, Resin J, Kraus K, Bracher J, Dimitriadis T, Hagenmeyer V, Jordan AI, Lerch S, Phipps K, Schienle M (2023). Model diagnostics and forecast evaluation for quantiles, Annual Review of Statistics and Its Application, 10:597–621 1549
• Geen S, Agrawal P, Crowther PA, Keller BW, Koter Ad, Keszthelyi Z, Voort Fvd, Ali AA, Backs F, Bonne L, Brugaletta V, Derkink A, Ekström S, Fichtner YA, Grassitelli L, Götberg Y, Higgins ER, Laplace E, Liow KY, Lorenzo M, McLeod AF, Meynet G, Newsome M, Oliva GA, Ramachandran V, Rey MP, Rieder S, Romano-Díaz E, Sabhahit G, Sander AAC, Sarwar R, Stinshoff H, Stoop M, Szécsi D, Trebitsch M, Vink JS, Winch E (2023). Bringing Stellar Evolution and Feedback Together: Summary of Proposals from the Lorentz Center Workshop, PASP 135(1044):021001 1768
• Ferraz MVF, Neto JCS, Lins RD, Teixeira ES (2023). An artificial neural network model to predict structure-based protein–protein free energy of binding from Rosetta-calculated properties, Phys. Chem. Chem. Phys. 25(10):7257-7267 1784
• Schröder M, Machmeier S, Heuveline V (2023). VTABLE HIJACKING: OBJECT TYPE INTEGRITY FOR RUN- TIME TYPE INFORMATION 1801
• Gneiting T, Lerch S, Schulz B (2023). Probabilistic solar forecasting: Benchmarks, post-processing, verification, Solar Energy, 252:72–80 1571
• Dominguez-Valentin M, Haupt S, Seppälä TT, Sampson JR, Sunde L, Bernstein I, Jenkins MA, Engel C, Aretz S, Nielsen M, Capella G, Balaguer F, Evans DG, Burn J, Holinski-Feder E, Bertario L, Bonanni B, Lindblom A, Levi Z, Macrae F, Winship I, Plazzer J, Sijmons R, Laghi L, Valle AD, Heinimann K, Dębniak T, Fruscio R, Lopez-Koestner F, Alvarez-Valenzuela K, Katz LH, Laish I, Vainer E, Vaccaro C, Carraro DM, Monahan K, Half E, Stakelum A, Winter D, Kennelly R, Gluck N, Sheth H, Abu-Freha N, Greenblatt M, Rossi BM, Bohorquez M, Cavestro GM, Lino-Silva LS, Horisberger K, Tibiletti MG, Nascimento Id, Thomas H, Rossi NT, Silva LAd, Zaránd A, Ruiz-Bañobre J, Heuveline V, Mecklin J, Pylvänäinen K, Renkonen-Sinisalo L, Lepistö A, Peltomäki P, Therkildsen C, Madsen MG, Burgdorf SK, Hopper JL, Win AK, Haile RW, Lindor N, Gallinger S, Marchand LL, Newcomb PA, Figueiredo J, Buchanan DD, Thibodeau SN, Doeberitz MvK, Loeffler M, Rahner N, Schröck E, Steinke-Lange V, Schmiegel W, Vangala D, Perne C, Hüneburg R, Redler S, Büttner R, Weitz J, Pineda M, Duenas N, Vidal JB, Moreira L, Sánchez A, Hovig E, Nakken S, Green K, Lalloo F, Hill J, Crosbie E, Mints M, Goldberg Y, Tjandra D, Broeke SWt, Kariv R, Rosner G, Advani SH, Thomas L, Shah P, Shah M, Neffa F, Esperon P, Pavicic W, Torrezan GT, Bassaneze T, Martin CA, Moslein G, Moller P (2023). Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database, eClinicalMedicine:101909 1644
• Konig M, Gleeson P, Golebiewski M, Gorochowski TE, Hucka M, Keating SM, Myers CJ, Nickerson DP, Sommer B, Waltemath D, Schreiber F (2023). Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022., J Integr Bioinform. 2023 Mar 29;20(1):20230004. doi: 10.1515/jib-2023-0004. eCollection 2023 Mar 1. 1654
• Moran-Fraile J, Schneider F, Roepke F, Ohlmann S, Pakmor R, Soultanis T, Bauswein A (2023). Gravitational wave emission from dynamical stellar interactions, A&A 1643
• Müller W, Mertova L (2023). ReStoRunT: Simple Recording, Storing, Running and Tracing changes in Spreadsheets, In: König-Ries, B., Scherzinger, S., Lehner, W. & Vossen, G. (Hrsg.), BTW 2023. Gesellschaft für Informatik e.V.. DOI: 10.18420/BTW2023-57 1666
• Ehret T, Heißenberg T, Buhr Sd, Aponte-Santamaría C, Steinem C, Gräter F (2023). FERM domains recruit ample PI(4,5)P2s to form extensive protein-membrane attachments, Biophysical Journal 1649
• Buhr J, Franz F, Gräter F (2023). Intrinsically disordered region of talin’s FERM domain functions as an initial PIP2 recognition site, Biophysical Journal 1650
• Lauterbach S, Dienhart H, Range J, Malzacher S, Sporing JD, Rother D, Pinto MF, Martins P, Lagerman CE, Bommarius AS, Host AV, Woodley JM, Ngubane S, Kudanga T, Bergmann FT, Rohwer JM, Iglezakis D, Weidemann A, Wittig U, Kettner C, Swainston N, Schnell S, Pleiss J (2023). EnzymeML: seamless data flow and modeling of enzymatic data., Nat Methods. 2023 Feb 9. doi: 10.1038/s41592-022-01763-1. 1612
• Santos VMD, Anton M, Szomolay B, Ostaszewski M, Arts I, Benfeitas R, Angel VDD, Dominguez-Romero E, Ferk P, Fey D, Goble C, Golebiewski M, Gruden K, Heil KF, Hermjakob H, Kahlem P, Klapa MI, Koehorst J, Kolodkin A, Kutmon M, Leskosek B, Moretti S, Muller W, Pagni M, Rezen T, Rocha M, Rozman D, Safranek D, Scott WT, Sheriff RSM, Diez MS, Steen KV, Westerhoff HV, Wittig U, Wolstencroft K, Zupanic A, Evelo CT, Hancock JM (2023). Systems Biology in ELIXIR: modelling in the spotlight., F1000Res. 2022 Nov 7;11:ELIXIR-1265. doi: 10.12688/f1000research.126734.2. eCollection 2022. 2047
• Nuñez FP, Bruckmann C, Desamutara S, Czerny B, Panda S, Lobban AP, Pietrzyński G, Polsterer KL (2023). Modeling photometric reverberation mapping data for the next generation of big data surveys. Quasar accretion disks sizes with the LSST, Monthly Notices of the Royal Astronomical Society,stad286 1630
• Maltsev K (2023). Stellar gravitational collapse, singularity formation and theory breakdown, The Sixteenth Marcel Grossmann Meeting,pp.3596-3625,WORLD SCIENTIFIC 1608
• Röpke FK, Lach F, Gronow S, Sim SA, Callan FP, Collins CE (2023). Modeling Type Ia supernovae with explosions in white dwarfs near and below the Chandrasekhar mass, The Sixteenth Marcel Grossmann Meeting,pp.4420-4426,WORLD SCIENTIFIC 1610
• Csörnyei G, Vogl C, Taubenberger S, Flörs A, Blondin S, Cudmani MG, Holas A, Kressierer S, Leibundgut B, Hillebrandt W (2023). Family dispute: do Type IIP supernova siblings agree on their distance?, Astronomy and Astrophysics - A&A 1611
• Schweder F (2023). Probabilistic Modelling of Time Series for explorative Big Data Analysis in Astronomy (Master's Thesis) 1626
• Czerny B, Cao S, Jaiswal VK, Karas V, Khadka N, Martínez-Aldama ML, Naddaf MH, Panda S, Nuñez FP, Prince R, Ratra B, Sniegowska M, Yu Z, Zajaček M (2023). Accretion disks, quasars and cosmology: meandering towards understanding, Astrophys Space Sci 368(2),8 1628
• Zaunseder E, Mütze U, Garbade SF, Haupt S, Feyh P, Hoffmann GF, Heuveline V, Kölker S (2023). Machine Learning Methods Improve Specificity in Newborn Screening for Isovaleric Aciduria, Metabolites 13(2):304 1631
• Criswell AW, Miller J, Woldemariam N, Soultanis T, Bauswein A, Chatziioannou K, Coughlin MW, Jones G, Mandic V (2023). Hierarchical Bayesian method for constraining the neutron star equation of state with an ensemble of binary neutron star postmerger remnants, Phys. Rev. D 107(4),043021 1641
• Yu J, Khanna S, Themessl N, Hekker S, Dréau G, Gizon L, Bi S (2023). Revised Extinctions and Radii for 1.5 Million Stars Observed by APOGEE, GALAH, and RAVE, ApJS 264(2):41 1704
• Strehmel J, Bettisworth B, Höhler D, Stamatakis A (2023). Is there a Correlation between the Use of Swearwords and Code Quality in Open Source Code? (Bachelor's Thesis) 1917
• Ehlert C, Piras A, Schleicher J, Gryn’ova G (2023). Metal-Free Molecular Catalysts for the Oxygen Reduction Reaction: Electron Affinity as an Activity Descriptor, J. Phys. Chem. Lett. 14(2):476-480 1568
• Ernst M, Poręba T, Gnägi L, Gryn’ova G (2023). Locating Guest Molecules inside Metal–Organic Framework Pores with a Multilevel Computational Approach, J. Phys. Chem. C 127(1):523-531 1567
• Keulen SCv, Martin J, Colizzi F, Frezza E, Trpevski D, Diaz NC, Vidossich P, Rothlisberger U, Kotaleski JH, Wade RC, Carloni P (2023). Multiscale molecular simulations to investigate adenylyl cyclase‐based signaling in the brain, WIREs Comput Mol Sci 13(1),e1623 1493
• Cornelio C, Stuehmer J, Hu SX, Hospedales T (2023). Learning where and when to reason in neuro-symbolic inference, In The Eleventh International Conference on Learning Representations 1596
• Schröter J, Dattner T, Hüllein J, Jayme A, Heuveline V, Hoffmann GF, Kölker S, Lenz D, Opladen T, Popp B, Schaaf CP, Staufner C, Syrbe S, Uhrig S, Hübschmann D, Brennenstuhl H (2023). aRgus: Multilevel visualization of non-synonymous single nucleotide variants & advanced pathogenicity score modeling for genetic vulnerability assessment, Computational and Structural Biotechnology Journal 21:1077-1083 1613
• Leaman R, Islamaj R, Adams V, Alliheedi MA, Almeida JR, Antunes R, Bevan R, Chang Y, Erdengasileng A, Hodgskiss M, Ida R, Kim H, Li K, Mercer RE, Mertová L, Mobasher G, Shin H, Sung M, Tsujimura T, Yeh W, Lu Z (2023). Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII, Database 2023,baad005 1642
• Chavhan R, Gouk H, Stuehmer J, Heggan C, Yaghoobi M, Hospedales T (2023). Amortised Invariance Learning for Contrastive Self-Supervision, In The Eleventh International Conference on Learning Representations 1653
• Mobasher G, Müller W, Krebs O, Gertz M (2023). WeLT: Improving Biomedical Fine-tuned Pre-trained Language Models with Cost-sensitive Learning, Ghadeer Mobasher, Wolfgang Müller, Olga Krebs, and Michael Gertz. 2023. WeLT: Improving Biomedical Fine-tuned Pre-trained Language Models with Cost-sensitive Learning. In The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, pages 427–438, Toronto, Canada. Association for Computational Linguistics. 1684
• Koptekin D, Yüncü E, Rodríguez-Varela R, Altınışık NE, Psonis N, Kashuba N, Yorulmaz S, George R, Kazancı DD, Kaptan D, Gürün K, Vural KB, Gemici HC, Vassou D, Daskalaki E, Karamurat C, Lagerholm VK, Erdal ÖD, Kırdök E, Marangoni A, Schachner A, Üstündağ H, Shengelia R, Bitadze L, Elashvili M, Stravopodi E, Özbaşaran M, Duru G, Nafplioti A, Rose CB, Gencer T, Darbyshire G, Gavashelishvili A, Pitskhelauri K, Çevik Ö, Vuruşkan O, Kyparissi-Apostolika N, Büyükkarakaya AM, Oğuzhanoğlu U, Günel S, Tabakaki E, Aliev A, Ibrahimov A, Shadlinski V, Sampson A, Kılınç GM, Atakuman Ç, Stamatakis A, Poulakakis N, Erdal YS, Pavlidis P, Storå J, Özer F, Götherström A, Somel M (2023). Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean, Current Biology 33(1):41-57.e15 1742
• Morel B, Williams TA, Stamatakis A (2023). Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data, Bioinformatics 39(1),btac832 1744
• Haag J, Hübner L, Kozlov AM, Stamatakis A (2023). The Free Lunch is not over yet—systematic exploration of numerical thresholds in maximum likelihood phylogenetic inference, Bioinformatics Advances 3(1),vbad124 1749
• Psonis N, Vassou D, Nafplioti A, Tabakaki E, Pavlidis P, Stamatakis A, Poulakakis N (2023). Identification of the 18 World War II Executed Citizens of Adele, Rethymnon, Crete Using an Ancient DNA Approach and Low Coverage Genomes, [Preprint] 1752
• Varma V, Müller B, Schneider FR (2023). 3D simulations of strongly magnetized non-rotating supernovae: explosion dynamics and remnant properties, Monthly Notices of the Royal Astronomical Society 518(3):3622-3636 1756
• Bruers B, Cruces M, Demleitner M, Duckeck G, Düren M, Eich N, Enßlin T, Erdmann J, Erdmann M, Fackeldey P, Felder C, Fischer B, Fröse S, Funk S, Gasthuber M, Grimshaw A, Hadasch D, Hannemann M, Kappes A, Kleinemühl R, Kozlov OM, Kuhr T, Lupberger M, Neuhaus S, Niknejadi P, Reindl J, Schindler D, Schneidewind A, Schreiber F, Schumacher M, Schwarz K, Streit A, Cube RFv, Walker R, Walther C, Wozniewski S, Zhou K (2023). Resource-aware Research on Universe and Matter: Call-to-Action in Digital Transformation, arXiv,physics.comp-ph,2311.01169 1764
• Ferraz M (2023). Enhanced sampling simulations and machine learning to address infectious diseases (Doctoral Thesis), Chemistry, Department of Chemistry, Federal University of Pernambuco, Recife, Brazil 1785
• Zharov Y, Ametova E, Spiecker R, Baumbach T, Burca G, Heuveline V (2023). Shot noise reduction in radiographic and tomographic multi-channel imaging with self-supervised deep learning, Opt. Express 31(16):26226 1798
• Gneiting T, Resin J (2023). Regression diagnostics meets forecast evaluation: Conditional calibration, reliability diagrams, and coefficient of determination, Electronic Journal of Statistics, 17(2):3226–3286 1813