HITS Publications

2011

• Assef RJ, Denney KD, Kochanek CS, Peterson BM, Kozłowski S, Ageorges N, Barrows RS, Buschkamp P, Dietrich M, Falco E, Feiz C, Gemperlein H, Germeroth A, Grier CJ, Hofmann R, Juette M, Khan R, Kilic M, Knierim V, Laun W, Lederer R, Lehmitz M, Lenzen R, Mall U, Madsen KK, Mandel H, Martini P, Mathur S, Mogren K, Mueller P, Naranjo V, Pasquali A, Polsterer K, Pogge RW, Quirrenbach A, Seifert W, Stern D, Shappee B, Storz C, Saders JV, Weiser P, Zhang D (2011). Black Hole Mass Estimates Based on C IV are Consistent with Those Based on the Balmer Lines, ApJ 742(2):93 453
• Mereghetti P, Wade RC (2011). Diffusion of hydrophobin proteins in solution and interactions with a graphite surface, BMC Biophys 4(1),9 594
• Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, Algaa E, Weidemann A, Sauer-Danzwith H, Mir S, Krebs O, Bittkowski M, Wetsch E, Rojas I, Muller W (2011). SABIO-RK–database for biochemical reaction kinetics., Nucleic Acids Res. 2012 Jan;40(Database issue):D790-6. doi: 10.1093/nar/gkr1046. Epub 2011 Nov 18. 8
• Wade RC (2011). Das biomolekulare Erkennungspuzzle, Spektrum der Wissenschaft - Extra, 14 - 17 740
• Salo-Ahen OMH, Wade RC (2011). The active-inactive transition of human thymidylate synthase: Targeted molecular dynamics simulations, Proteins 79(10):2886-2899 593
• Golubev VB, Filippov AN, Chernikova EV, Coote ML, Lin CY, Gryn’ova G (2011). The Use of Spin Traps for the Kinetic Investigation of Elementary Events of Pseudoliving Radical Reversible Addition-Fragmentation Chain-Transfer Polymerization, Polym. Sci. Ser. C 53(1):14-26 522
• Cardinale D, Guaitoli G, Tondi D, Luciani R, Henrich S, Salo-Ahen OMH, Ferrari S, Marverti G, Guerrieri D, Ligabue A, Frassineti C, Pozzi C, Mangani S, Fessas D, Guerrini R, Ponterini G, Wade RC, Costi MP (2011). Protein-protein interface-binding peptides inhibit the cancer therapy target human thymidylate synthase, Proceedings of the National Academy of Sciences 108(34):E542-E549 591
• Cojocaru V, Balali-Mood K, Sansom MSP, Wade RC (2011). Structure and Dynamics of the Membrane-Bound Cytochrome P450 2C9, PLoS Comput Biol 7(8):e1002152 592
• Pachov GV, Gabdoulline RR, Wade RC (2011). On the structure and dynamics of the complex of the nucleosome and the linker histone, Nucleic Acids Research 39(12):5255-5263 598
• Pasquali A, Bik A, Zibetti S, Ageorges N, Seifert W, Brandner W, Rix H, Jütte M, Knierim V, Buschkamp P, Feiz C, Gemperlein H, Germeroth A, Hofmann R, Laun W, Lederer R, Lehmitz M, Lenzen R, Mall U, Mandel H, Müller P, Naranjo V, Polsterer K, Quirrenbach A, Schäffner L, Storz C, Weiser P (2011). Infrared Narrowband Tomography of the Local Starburst NGC 1569 with the Large Binocular Telescope/LUCIFER., The Astronomical Journal 141(4):132 454
• Kholod YA, Gryn’ova G, Gorb L, Hill FC, Leszczynski J (2011). Evaluation of the Dependence of Aqueous Solubility of Nitro Compounds on Temperature and Salinity: A COSMO-RS Simulation, Chemosphere 83(3):287-294 524
• Sundar RS, Gopalakrishnan R, Wade RC, Subramanian V (2011). Structural Basis for the Varying Propensities of Different Amino Acids To Adopt the Collagen Conformation, J. Phys. Chem. B 115(11):2593-2607 595
• Kokh DB, Wade RC, Wenzel W (2011). Receptor flexibility in small-molecule docking calculations, WIREs Comput Mol Sci 1(2):298-314 596
• Cohavi O, Reichmann D, Abramovich R, Tesler AB, Bellapadrona G, Kokh DB, Wade RC, Vaskevich A, Rubinstein I, Schreiber G (2011). A Quantitative, Real-Time Assessment of Binding of Peptides and Proteins to Gold Surfaces, Chem. Eur. J. 17(4):1327-1336 600
• Ferrari S, Morandi F, Motiejunas D, Nerini E, Henrich S, Luciani R, Venturelli A, Lazzari S, Calò S, Gupta S, Hannaert V, Michels PAM, Wade RC, Costi MP (2011). Virtual Screening Identification of Nonfolate Compounds, Including a CNS Drug, as Antiparasitic Agents Inhibiting Pteridine Reductase, J. Med. Chem. 54(1):211-221 599
• Müller W, Rojas I, Eberhart A, Haase P, Schmidt M (2011). A-R-E: The Author-Review-Execute Environment, Procedia Computer Science 4:627-636 16
• Gryn'ova G, Hodgson JL, Coote ML (2011). Revising the Mechanism of Polymer Autooxidation, Org. Biomol. Chem. 9(2):480-490 521
• Marshall DL, Christian ML, Gryn'ova G, Coote ML, Barker PJ, Blanksby SJ (2011). Oxidation of 4-Substituted TEMPO Derivatives Reveals Modifications at the 1- and 4-Positions, Org. Biomol. Chem. 9(13):4936 523
• Mereghetti P, Kokh D, McCammon JA, Wade RC (2011). Diffusion and association processes in biological systems: theory, computation and experiment, BMC Biophys 4(1):2 597
• Subramaniam SR (2011). Sequence, Structure and Stability of Collagen and its Interaction with Collagenase. (Doctoral Thesis), University of Madras, Chennai. 854
• Garg D (2011). Computational and NMR Studies of Thymidylate Synthase and its Regulation (Doctoral Thesis), Faculty of Chemistry, Technical University of Munich 855
• Veith N (2011). Structural Comparison of Pyruvate Kinases. (Master's Thesis), Faculty of Biosciences, Ruprecht-Karls University, Heidelberg 856
• Nerini E (2011). System Approach to the Identification of Folate-related Enzyme Inhibitors with Anti-infectious Action (Doctoral Thesis), Doctoral School of Science and Technologies for Health Products, University of Modena and Reggio Emilia 857
• Hartnick T, Ott A (2011). Milnor-Wood type inequalities for Higgs bundles, arXiv, math.DG, 1105.4323 952
• Courtot M, Juty N, Knüpfer C, Waltemath D, Zhukova A, Dräger A, Dumontier M, Finney A, Golebiewski M, Hastings J, Hoops S, Keating S, Kell DB, Kerrien S, Lawson J, Lister A, Lu J, Machne R, Mendes P, Pocock M, Rodriguez N, Villeger A, Wilkinson DJ, Wimalaratne S, Laibe C, Hucka M, Novère NL (2011). Controlled vocabularies and semantics in systems biology, Mol Syst Biol 7(1):543 1353