HITS Publications

2015

• Mustafa G, Nandekar PP, Yu X, Wade RC (2015). On the application of the MARTINI coarse-grained model to immersion of a protein in a phospholipid bilayer, The Journal of Chemical Physics 143(24):243139 555
• Aberer AJ, Stamatakis A, Ronquist F (2015). An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees, Syst Biol 65(1):161-176 77
• Kugler SD (2015). On the application of machine learning approaches in astronomy: Exploring novel representations of high-dimensional and complex astronomical data (Doctoral Thesis) 1625
• Stanford NJ, Wolstencroft K, Golebiewski M, Kania R, Juty N, Tomlinson C, Owen S, Butcher S, Hermjakob H, Novère NL, Mueller W, Snoep J, Goble C (2015). The evolution of standards and data management practices in systems biology, Mol Syst Biol 11(12):851 7
• Jones S, Ritter C, Herwig F, Fryer C, Pignatari M, Bertolli MG, Paxton B (2015). H ingestion into He-burning convection zones in super-AGB stellar models as a potential site for intermediate neutron-density nucleosynthesis, Mon. Not. R. Astron. Soc. 455(4):3848-3863 423
• Seitenzahl IR, Herzog M, Ruiter AJ, Marquardt K, Ohlmann ST, Röpke FK (2015). Neutrino and gravitational wave signal of a delayed-detonation model of type Ia supernovae, Phys. Rev. D 92(12) 43
• Liu Z, Tauris TM, Röpke FK, Moriya TJ, Kruckow M, Stancliffe RJ, Izzard RG (2015). The interaction of core-collapse supernova ejecta with a companion star, A&A 584:A11 47
• Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C (2015). SEEK: a systems biology data and model management platform, BMC Syst Biol 9(1) 60
• McTavish EJ, Hillis DM (2015). How do SNP ascertainment schemes and population demographics affect inferences about population history?, BMC Genomics 16(1) 84
• McTavish EJ, Steel M, Holder MT (2015). Twisted trees and inconsistency of tree estimation when gaps are treated as missing data – The impact of model mis-specification in distance corrections, Molecular Phylogenetics and Evolution 93:289-295 85
• Garg D, Skouloubris S, Briffotaux J, Myllykallio H, Wade RC (2015). Conservation and Role of Electrostatics in Thymidylate Synthase, Sci Rep 5(1),17356 556
• Mendoza-Temis JdJ, Wu M, Langanke K, Martínez-Pinedo G, Bauswein A, Janka H (2015). Nuclear robustness of the r process in neutron-star mergers, Phys. Rev. C 92(5) 44
• Gryn'ova G, Coote ML, Corminboeuf C (2015). Theory and Practice of Uncommon Molecular Electronic Configurations, WIREs Comput Mol Sci 5(6):440-459 507
• Leaché AD, Banbury BL, Felsenstein J, Oca And, Stamatakis A (2015). Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies, Syst Biol 64(6):1032-1047 76
• Romanowska J, Kokh DB, Wade RC (2015). When the Label Matters: Adsorption of Labeled and Unlabeled Proteins on Charged Surfaces, Nano Lett. 15(11):7508-7513 557
• Hoecker M, Polsterer KL, Kugler SD, Heuveline V (2015). Clustering of Complex Data-Sets Using Fractal Similarity Measures and Uncertainties, 2015 IEEE 18th International Conference on Computational Science and Engineering,pp.82-91,IEEE 36
• López-Sánchez AR, Maksym WP, Polsterer KL, Borden K, Hollow RP, Whyte L (2015). Radio Galaxy Zoo: host galaxies and radio morphologies derived from visual inspection, Mon. Not. R. Astron. Soc. 453(3):2327-2341 35
• Polsterer KL, Gieseke F, Igel C (2015). Automatic Galaxy Classification via Machine Learning Techniques: Parallelized Rotation/Flipping INvariant Kohonen Maps (PINK), In Astronomical Data Analysis Software an Systems XXIV (ADASS XXIV), vol. 495 of Astronomical Society of the Pacific Conference Series, p. 81, Eds: Taylor, A. R. and Rosolowsky, E., Sep 2015 34
• Liu L, Wade RC, Heermann DW (2015). A multiscale approach to simulating the conformational properties of unbound multi-C2H2 zinc finger proteins, Proteins 83(9):1604-1615 560
• Baba S, Gupta S (2015). Holonomy map fibers of ℂP1-structures in moduli space, J Topology 8(3):691-710 997
• McTavish EJ, Hinchliff CE, Allman JF, Brown JW, Cranston KA, Holder MT, Rees JA, Smith SA (2015). Phylesystem: a git-based data store for community-curated phylogenetic estimates, Bioinformatics 31(17):2794-2800 83
• Sanderson MJ, McMahon MM, Stamatakis A, Zwickl DJ, Steel M (2015). Impacts of Terraces on Phylogenetic Inference, Syst Biol 64(5):709-726 72
• Pan Y, Foley RJ, Kromer M, Fox OD, Zheng W, Challis P, Clubb KI, Filippenko AV, Folatelli G, Graham ML, Hillebrandt W, Kirshner RP, Lee WH, Pakmor R, Patat F, Phillips MM, Pignata G, Röpke F, Seitenzahl I, Silverman JM, Simon JD, Sternberg A, Stritzinger MD, Taubenberger S, Vinko J, Wheeler JC (2015). 500 days of SN 2013dy: spectra and photometry from the ultraviolet to the infrared, Mon. Not. R. Astron. Soc. 452(4):4307-4325 46
• Martinez M, Bruce NJ, Romanowska J, Kokh DB, Ozboyaci M, Yu X, Öztürk MA, Richter S, Wade RC (2015). SDA 7: A modular and parallel implementation of the simulation of diffusional association software, J. Comput. Chem. 36(21):1631-1645 561
• Polsterer KL, Gieseke F, Gianniotis N, Kuegler SD (2015). Analyzing Complex and Structured Data via Unsupervised Learning Techniques, IAU General Assembly, 22:2258115, Aug 2015 32
• Marquardt KS, Sim SA, Ruiter AJ, Seitenzahl IR, Ohlmann ST, Kromer M, Pakmor R, Röpke FK (2015). Type Ia supernovae from exploding oxygen-neon white dwarfs, A&A 580:A118 39
• Nillegoda NB, Kirstein J, Szlachcic A, Berynskyy M, Stank A, Stengel F, Arnsburg K, Gao X, Scior A, Aebersold R, Guilbride DL, Wade RC, Morimoto RI, Mayer MP, Bukau B (2015). Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation, Nature 524(7564):247-251 559
• Kozlov AM, Aberer AJ, Stamatakis A (2015). ExaML version 3: a tool for phylogenomic analyses on supercomputers, Bioinformatics 31(15):2577-2579 74
• Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C (2015). SEEK: a systems biology data and model management platform., BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186/s12918-015-0174-y. 12
• Kromer M, Ohlmann ST, Pakmor R, Ruiter AJ, Hillebrandt W, Marquardt KS, Röpke FK, Seitenzahl IR, Sim SA, Taubenberger S (2015). Deflagrations in hybrid CONe white dwarfs: a route to explain the faint Type Iax supernova 2008ha, Monthly Notices of the Royal Astronomical Society 450(3):3045-3053 40
• Dinh TV, Bienvenut WV, Linster E, Feldman-Salit A, Jung VA, Meinnel T, Hell R, Giglione C, Wirtz M (2015). Molecular identification and functional characterization of the first Nα-acetyltransferase in plastids by global acetylome profiling, Proteomics 15(14):2426-2435 562
• Yu X, Martinez M, Gable AL, Fuller JC, Bruce NJ, Richter S, Wade RC (2015). webSDA: a web server to simulate macromolecular diffusional association, Nucleic Acids Res 43(W1):W220-W224 564
• Kügler SD, Gianniotis N, Polsterer KL (2015). Featureless classification of light curves, Mon. Not. R. Astron. Soc. 451(4):3385-3392 33
• Seybold C, Elserafy M, Rüthnick D, Ozboyaci M, Neuner A, Flottmann B, Heilemann M, Wade RC, Schiebel E (2015). Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope, The Journal of Cell Biology 209(6):843-861 563
• Flouri T, Giaquinta E, Kobert K, Ukkonen E (2015). Longest common substrings with k mismatches, Information Processing Letters 115(6-8):643-647 86
• Schreiber F, Bader GD, Golebiewski M, Hucka M, Kormeier B, Novère NL, Myers C, Nickerson D, Sommer B, Waltemath D, Weise S (2015). Specifications of Standards in Systems and Synthetic Biology, Journal of Integrative Bioinformatics 12(2):1-3 488
• Romanowska J, Kokh DB, Fuller JC, Wade RC (2015). Computational Approaches for Studying Drug Binding Kinetics, Thermodynamics and Kinetics of Drug Binding,pp.211-235,Wiley-VCH Verlag GmbH & Co. KGaA 567
• Gianniotis N, Kügler SD, Tino P, Polsterer KL, Misra R (2015). Autoencoding Time Series for Visualisation, In European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, pp. 495-500, May 2015 31
• Barton C, Flouri T, Iliopoulos CS, Pissis SP (2015). Global and local sequence alignment with a bounded number of gaps, Theoretical Computer Science 582:1-16 87
• Salo-Ahen OMH, Tochowicz A, Pozzi C, Cardinale D, Ferrari S, Boum Y, Mangani S, Stroud RM, Saxena P, Myllykallio H, Costi MP, Ponterini G, Wade RC (2015). Hotspots in an Obligate Homodimeric Anticancer Target. Structural and Functional Effects of Interfacial Mutations in Human Thymidylate Synthase, J. Med. Chem. 58(8):3572-3581 565
• Kügler SD, Polsterer K, Hoecker M (2015). Determining spectroscopic redshifts by using k nearest neighbor regression. I. Description of method and analysis, A&A 576:A132 30
• Miczek F, Röpke FK, Edelmann PVF (2015). New numerical solver for flows at various Mach numbers, A&A 576:A50 37
• Fuller JC, Martinez M, Henrich S, Stank A, Richter S, Wade RC (2015). LigDig: a web server for querying ligand–protein interactions, Bioinformatics 31(7):1147-1149 569
• Bruce NJ, Kokh DB, Ozboyaci M, Wade RC (2015). Modelling of solvation effects for brownian dynamics simulation of biomolecular recognition., IAS series 28:259-280 566
• Hucka M, Nickerson DP, Bader G, Bergmann FT, Cooper J, Demir E, Garny A, Golebiewski M, Myers CJ, Schreiber F, Waltemath D, Novère NL (2015). Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative, Front. Bioeng. Biotechnol. 3 1126
• Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BFF, Pawlik A, Blomberg N (2015). A Quick Guide for Building a Successful Bioinformatics Community., PLoS Comput Biol 11(2):e1003972 738
• Stoutenburg EG, Gryn’ova G, Coote ML, Priefer R (2015). Chemical Shift and Coupling Constant Analysis of Dibenzyloxy Disulfides, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 136:1924-1931 510
• Marshall DL, Gryn'ova G, Coote ML, Barker PJ, Blanksby SJ (2015). Experimental Evidence for Competitive N-O and O-C Bond Homolysis in Gas-Phase Alkoxyamines, International Journal of Mass Spectrometry 378:38-47 511
• Yu X, Cojocaru V, Mustafa G, Salo-Ahen OMH, Lepesheva GI, Wade RC (2015). Dynamics of CYP51: implications for function and inhibitor design, J. Mol. Recognit. 28(2):59-73 568
• Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, Wood NT (2015). Ten Simple Rules for Organizing an Unconference, PLoS Comput Biol 11(1):e1003905 737
• Diehl R, Siegert T, Hillebrandt W, Krause M, Greiner J, Maeda K, Röpke FK, Sim SA, Wang W, Zhang X (2015). SN2014J gamma rays from the 56Ni decay chain, A&A 574:A72 45
• Inserra C, Sim SA, Wyrzykowski L, Smartt SJ, Fraser M, Nicholl M, Shen KJ, Jerkstrand A, Gal-Yam A, Howell DA, Maguire K, Mazzali P, Valenti S, Taubenberger S, Benitez-Herrera S, Bersier D, Blagorodnova N, Campbell H, Chen T, Elias-Rosa N, Hillebrandt W, Kostrzewa-Rutkowska Z, Kozłowski S, Kromer M, Lyman JD, Polshaw J, Röpke FK, Ruiter AJ, Smith K, Spiro S, Sullivan M, Yaron O, Young D, Yuan F (2015). OGLE-2013-SN-079: A Lonely Supernova Consistent with a Helium Shell Detonation, ApJ 799(1):L2 41
• Travaglio C, Gallino R, Rauscher T, Röpke FK, Hillebrandt W (2015). Testing the Role of SNe Ia for Galactic Chemical Evolution of p-nuclei with Two-dimensional Models and with s-process Seeds at Different Metallicities, ApJ 799(1):54 42
• Baran S, Lerch S (2015). Log‐normal distribution based ensemble model output statistics models for probabilistic wind‐speed forecasting, Quarterly Journal of the Royal Meteorological Society, 141(691):2289–2299 48
• Feldmann K, Scheuerer M, Thorarinsdottir TL (2015). Spatial postprocessing of ensemble forecasts for temperature using nonhomogeneous Gaussian regression, Monthly Weather Review, 143(3):955–971 50
• Hansen L, Thorarinsdottir T, Ovcharov E, Gneiting T, Richards D (2015). Gaussian random particles with flexible Hausdorff dimension, Advances in Applied Probability, 47(2):307–327 52
• Hemri S, Lisniak D, Klein B (2015). Multivariate postprocessing techniques for probabilistic hydrological forecasting, Water Resources Research, 51(9):7436–7451 54
• Ovcharov E (2015). Existence and uniqueness of proper scoring rules, Journal of Machine Learning Research, 16(67):2207–2230 55
• Schefzik R (2015). Multivariate discrete copulas, with applications in probabilistic weather forecasting, Publications de l'Institut de Statistique de l'Université de Paris, 59:87–116 57
• Gerstner P, Schick M, Heuveline V (2015). A Multilevel Domain Decomposition approach for solving time constrained Optimal Power Flow problems, Preprint Series of the Engineering Mathematics and Computing Lab, 4:1-32 61
• Hoecker M, Polsterer KL, Kugler SD, Heuveline V (2015). Clustering of Complex Data-Sets Using Fractal Similarity Measures and Uncertainties, In Computational Science and Engineering (CSE), 2015 IEEE 18th International Conference on, pp. 82-91 62
• Meyer-Hübner N, Suriyah M, Leibfried T, Slednev V, Bertsch V, Fichtner W, Gerstner P, Schick M, Heuveline V (2015). Time Constrained Optimal Power Flow Calculations on the German Power Grid, In Proceedings of International ETG Congress, Bonn 63
• Song C, Schick M, Heuveline V (2015). A Polynomial Chaos Method for Uncertainty Quantification in Blood Pump Simulation, In Proceedings of the 1st International Conference on Uncertainty Quantification in Computational Sciences and Engineering (UNCECOMP) 64
• Kratzke J, Schick M, Heuveline V (2015). Fluid-Structure Interaction Simulation of an Aortic Phantom with Uncertain Young’s Modulus Using the Polynomial Chaos Expansion, Applied Mechanics and Materials, 807:34-44 65
• Kratzke J, Schoch N, Weis C, Mueller-Eschner M, Speidel S, Farag M, Beller C, Heuveline V (2015). Enhancing 4D PC-MRI in an aortic phantom considering numerical simulations, In Proceedings of SPIE Medical Imaging 2015: Physics of Medical Imaging 66
• Schoch N, Engelhardt S, Zimmermann N, Speidel S, Simone RD, Wolf I, Heuveline V (2015). Integration of a biomechanical simulation for mitral valve reconstruction into a knowledge-based surgery assistance system, In Proceedings of SPIE Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions, and Modeling 67
• Bromberger M, Karl W, Heuveline V (2015). Exploiting approximate computing methods in FPGAs to accelerate stereo correspondence algorithms, In HiPEAC Conference, Amsterdam, Netherlands, Jan 2015 70
• Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer A, Nguyen L, Minh B, Häseler AV, Stamatakis A (2015). The phylogenetic likelihood library, Systematic Biology, 64(2):356–362 71
• Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, others (2015). Phylogenomic analyses data of the avian phylogenomics project, GigaScience, 4(1):1–9 73
• Kobert K, Salichos L, Rokas A, Stamatakis A (2015). Computing the Internode Certainty and related measures from partial gene trees., biorxiv;022053v2,[Preprint] 75
• Stamatakis A (2015). Using RAxML to Infer Phylogenies, Current Protocols in Bioinformatics, pp. 6–14 78
• Flouri T, Kobert K, Rognes T, Stamatakis A (2015). Are all global alignment algorithms and implementations correct?, biorxiv;031500v1,[Preprint] 79
• Darriba D, Flouri T, Stamatakis A (2015). The State of Software in Evolutionary Biology, biorxiv;031930v1,[Preprint] 80
• Baudis N, Barbera P, Graf S, Lutteropp S, Opitz D, Flouri T, Stamatakis A (2015). Two Independent and Highly Efficient Open Source TKF91 Implementations, biorxiv;033191v1,[Preprint] 81
• Czech L, Stamatakis A (2015). Do Phylogenetic Tree Viewers correctly display Support Values?, biorxiv;035360v4,[Preprint] 82
• Gräter F, Li W (2015). Transition Path Sampling with Quantum/Classical Mechanics for Reaction Rates, In Molecular Modeling of Proteins, pp. 27–45, Springer New York 88
• Peralta D, Bronowska AK, Morgan B, Dóka É, Laer KV, Nagy P, Gräter F, Dick TP (2015). A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation, Nature Chemical Biology, 11(2):156–163 89
• Beckmann A, Xiao S, Müller JP, Mercadante D, Nüchter T, Kröger N, Langhojer F, Petrich W, Holstein TW, Benoit M, others (2015). A fast recoiling silk-like elastomer facilitates nanosecond nematocyst discharge, BMC biology, 13(1):3 90
• Zhou J, Bronowska A, Le Coq J, Lietha D, Gräter F (2015). Allosteric Regulation of Focal Adhesion Kinase by PIP 2 and ATP, Biophysical Journal, 108(3):698–705 91
• Li W, Baldus IB, Gräter F (2015). Redox Potentials of Protein Disulfide Bonds from Free-Energy Calculations, The Journal of Physical Chemistry B, 119(17):5386–5391 92
• Aponte-Santamarı́a C, Huck V, Posch S, Bronowska AK, Graessle S, Brehm MA, Obser T, Schneppenheim R, Hinterdorfer P, Schneider SW, others (2015). Force-Sensitive Autoinhibition of the von Willebrand Factor Is Mediated by Interdomain Interactions, Biophysical journal, 108(9):2312–2321 93
• Mercadante D, Milles S, Fuertes G, Svergun DI, Lemke EA, Gräter F (2015). Kirkwood–Buff approach rescues overcollapse of a disordered protein in canonical protein force fields, The Journal of Physical Chemistry B, 119(25):7975–7984 94
• Wagner JA, Mercadante D, Nikić I, Lemke EA, Gräter F (2015). Origin of Orthogonality of Strain-Promoted Click Reactions, Chemistry–A European Journal, 21(35):12431–12435 95
• Louet M, Seifert C, Hensen U, Gräter F (2015). Dynamic Allostery of the Catabolite Activator Protein Revealed by Interatomic Forces, PLoS Comput Biol, 11(8):e1004358 96
• Milles S, Mercadante D, Aramburu IV, Jensen MR, Banterle N, Köhler C, Tyagi S, Clarke J, Shammas SL, Blackledge M, others (2015). Plasticity of an ultrafast interaction between nucleoporins and nuclear transport receptors, Cell, 163(3):734–745 97
• Zhou J, Aponte-Santamaría C, Sturm S, Bullerjahn JT, Bronowska A, Gräter F (2015). Mechanism of Focal Adhesion Kinase Mechanosensing, PLoS Comput Biol, 11(11):e1004593 98
• Klinska M, Smith LM, Gryn'ova G, Banwell MG, Coote ML (2015). Experimental Demonstration of pH-Dependent Electrostatic Catalysis of Radical Reactions, Chem. Sci. 6(10):5623-5627 508
• Pahnke K, Brandt J, Gryn'ova G, Lindner P, Schweins R, Schmidt FG, Lederer A, Coote ML, Barner-Kowollik C (2015). Entropy-Driven Chain Effects on Ligation Chemistry, Chem. Sci. 6(2):1061-1074 509
• Rosa M, Kokh DB, Corni S, Wadet R, Felice RD (2015). Docking of DNA duplexes on a gold surface, JSAME 2015(1):1-18 554
• Tomić A, Berynskyy M, Wade RC, Tomić S (2015). Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding, Mol. BioSyst. 11(11):3068-3080 558
• Berinski M (2015). Macromolecular Interactions: in silico prediction of the structures of complexes between proteins (Doctoral Thesis), Faculty of Informatics and Mathematics, Johann Wolfgang Goethe Universität, Frankfurt am Main 883
• Ganotra GK (2015). Methods to Compute and Investigate Drug Binding Kinetics (Master's Thesis), Life Science Informatics, University of Bonn, Rebecca C. Wade (HITS Tutor) 884
• Yu X (2015). Multiscale Simulations of Cytochrome P450 Systems (Doctoral Thesis), Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University of Heidelberg 885
• Peón-Nieto A (2015). Cameral data for SU(p+1,p)-Higgs bundles, arXiV, math.AG, 1506.01318 950
• Hartnick T, Ott A (2015). Bounded cohomology via partial differential equations, I, Geom. Topol. 19(6):3603-3643 954
• Guéritaud F, Guichard O, Kassel F, Wienhard A (2015). Compactification of certain Clifford-Klein forms of reductive homogeneous spaces, arXiv,math.GT,1506.03742 969
• Alessandrini D, Li Q (2015). ADS 3-manifolds and Higgs bundles, arXiv,math.DG,1510.07745 976
• Choi S, Lee G (2015). Projective deformations of weakly orderable hyperbolic Coxeter orbifolds, Geom. Topol. 19(4):1777-1828 986
• Baba S (2015). 2π–grafting and complex projective structures, I, Geom. Topol. 19(6):3233-3287 996
• Horn M (2015). Clustering and Scoring the Druggability of Transient Protein Pockets (Bachelor's Thesis), Molecular Biotechnology, Faculty of Biosciences, Ruprecht-Karls University Heidelberg, 2015, Rebecca C. Wade and Antonia Stank(HITS Tutor) 1028
• Waldhauer M (2015). Brownian Dynamics Simulations of Chymotrypsin Inhibitor 2 in Concentrated Protein Solutions (Bachelor's Thesis), Molecular Biotechnology, Faculty of Biosciences, Ruprecht-Karls University Heidelberg, 2015, Rebecca C. Wade and Neil J. Bruce 1029
• Schefzik R (2015). Physically coherent probabilistic weather forecasts using multivariate discrete copula-based ensemble postprocessing methods (Doctoral Thesis), PhD Thesis, Faculty of Mathematics and Computer Science, Heidelberg University 1415
• Stühmer J, Cremers D (2015). A fast projection method for connectivity constraints in image segmentation, In International Workshop on Energy Minimization Methods in Computer Vision and Pattern Recognition, pp. 183–196 1521
• Stuhmer J, Nowozin S, Fitzgibbon A, Szeliski R, Perry T, Acharya S, Cremers D, Shotton J (2015). Model-based tracking at 300hz using raw time-of-flight observations, In Proceedings of the IEEE International Conference on Computer Vision, pp. 3577–3585 1527