Generating Highly Designable Proteins with Geometric Algebra Flow Matching
HITS Lab / SIMPLAIX Software
TRADE: Transfer of Distributions between External Conditions with Normalizing Flows
SIMPLAIX Software
PAL: Parallel Active Learning – automated, modular, and parallel active learning workflow
SIMPLAIX Software
ParGenes
A tool for massively parallel model selection and phylogenetic tree inference on thousands of genes using thousands of cores, based on …
RootDigger
RootDigger uses a non-reversible Markov model to compute the most likely root location on a given tree. It is available for …
SCRAPP
Species Counting on Reference trees viA Phylogenetic Placements – bridging the gap between phylogenetic placement results and alpha diversity metrics, with the …
SpeciesRax
A tool for maximum likelihood species tree inference from gene family trees under duplication, transfer, and loss. It is available for …
NetRAX
A tool for accurate and fast maximum likelihood based inference of phylogenetic networks.It is available for download here.
SoftWipe
A tool and benchmark for assessing adherence of scientific software to coding quality standards.It is available for download here.
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