GeneRax
A tool for species tree-aware maximum likelihood based gene family tree inference under gene duplication, transfer, and loss.
KIMMDY
We have developed a simulation scheme called KIMMDY (Kinetic Monte Carlo / Molecular Dynamics) that enables covalent bond …
Colbuilder
Collagen is the most abundant protein of our body, and yet, we know surprisingly little about its atomistic structure. In an …
Force distribution analysis (FDA)
Force distribution analysis (FDA) is a method to detect and follow force and stress propagation in proteins, reminiscent of Finite Element …
PEAR – Paired-End reAd mergeR
An ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just …
GapMis
A tool for flexible pairwise sequence alignment with a variable, but bounded, number of gaps.
POS Annotation for ICSI Meeting Recorder Data
Here you find the Part of Speech annotation for the ICSI Meeting Recorder Data. Please note, that the files only contain …
WikiBiography Corpus
WikiBiography Click here to download WikiBiography. WikiBiography is a corpus of about 1200 annotated biographies from the German version of Wikipedia. Fully …
CoCoBi
CoCoBi is a Corpus of Comparable Biographies in German and contains 400 annotated biographies of 141 famous people. Automatic annotation was done the …
Evaluation Metrics for End-to-End Coreference Resolution
Commonly used coreference resolution evaluation metrics can only be applied to key mentions (i.e.already annotated mentions). We here propose …