The all new faster ModelTest, superseding jModelTest and ProtTest.

Second version of libpll, including site repeats optimization.

A simple graphical tree comparison tool that visualizes differences between up to four different trees by highlighting the branches (bipartitions/splits) …

Old Tree visualization tool using treemaps and taxonomic information.

Highly optimized versions of Pierre Legendre’s Parafit and DistPCoA programs for statistical analysis of host-parasite coevolution.

A new, scalable algorithm for rogue taxon identification.

An optimized (using vector intrinsics) and parallelized version (using OpenMP) of the DPPDIV (original code by Tracy Heath) code for estimating …

The code from the paper: S. Berger, R. Lücking, A. Stamatakis on “Morphology-based phylogenetic binning of the lichen genera Graphis …

Prediction of missing sequences and branch lengths on phylogenies inferred using MSAs that have missing/gappy data.

A tool for delimiting species on phylogenies and evolutionary placements.