HITS Publikationen

2018

• Kamp Tvd, Schwermann AH, Rolo TdS, Lösel PD, Engler T, Etter W, Faragó T, Göttlicher J, Heuveline V, Kopmann A, Mähler B, Mörs T, Odar J, Rust J, Jerome NT, Vogelgesang M, Baumbach T, Krogmann L (2018). Parasitoid biology preserved in mineralized fossils, Nat Commun 9(1) 353
• Ergon M, Fransson C, Jerkstrand A, Kozma C, Kromer M, Spricer K (2018). Monte-Carlo methods for NLTE spectral synthesis of supernovae, A&A 620:A156 418
• Hong N, Petrović D, Lee R, Gryn’ova G, Purg M, Saunders J, Bauer P, Carr PD, Lin C, Mabbitt PD, Zhang W, Altamore T, Easton C, Coote ML, Kamerlin SCL, Jackson CJ (2018). The Evolution of Multiple Active Site Configurations in a Designed Enzyme, Nat Commun 9(1) 497
• Gryn’ova G, Lin K, Corminboeuf C (2018). Read between the Molecules: Computational Insights into Organic Semiconductors, J. Am. Chem. Soc. 140(48):16370-16386 493
• Barna B, Szalai T, Kerzendorf WE, Kromer M, Sim SA, Magee MR, Leibundgut B (2018). Type Iax supernovae as a few-parameter family, Monthly Notices of the Royal Astronomical Society 480(3):3609-3627 408
• Halling P, Fitzpatrick PF, Raushel FM, Rohwer J, Schnell S, Wittig U, Wohlgemuth R, Kettner C (2018). An empirical analysis of enzyme function reporting for experimental reproducibility: Missing/incomplete information in published papers, Biophysical Chemistry 242:22-27 910
• Ganotra GK, Wade RC (2018). Prediction of Drug–Target Binding Kinetics by Comparative Binding Energy Analysis, ACS Med. Chem. Lett. 9(11):1134-1139 385
• Linciano P, Pozzi C, Iacono Ld, Pisa Fd, Landi G, Bonucci A, Gul S, Kuzikov M, Ellinger B, Witt G, Santarem N, Baptista C, Franco C, Moraes CB, Müller W, Wittig U, Luciani R, Sesenna A, Quotadamo A, Ferrari S, Pöhner I, Cordeiro-da-Silva A, Mangani S, Costantino L, Costi MP (2018). Enhancement of Benzothiazoles as Pteridine Reductase-1 Inhibitors for the Treatment of Trypanosomatidic Infections, J. Med. Chem. 62(8):3989-4012 1008
• Fink M, Kromer M, Hillebrandt W, Röpke F, Pakmor R, Seitenzahl I, Sim S (2018). Thermonuclear explosions of rapidly differentially rotating white dwarfs: Candidates for superluminous Type Ia supernovae?, A&A 618:A124 417
• Ritter C, Herwig F, Jones S, Pignatari M, Fryer C, Hirschi R (2018). NuGrid stellar data set – II. Stellar yields from H to Bi for stellar models with MZAMS = 1–25 M⊙ and Z = 0.0001–0.02, Monthly Notices of the Royal Astronomical Society 480(1):538-571 1486
• Begolo D, Vincent IM, Giordani F, Pöhner I, Witty MJ, Rowan TG, Bengaly Z, Gillingwater K, Freund Y, Wade RC, Barrett MP, Clayton C (2018). The trypanocidal benzoxaborole AN7973 inhibits trypanosome mRNA processing, PLoS Pathog 14(9):e1007315 380
• Shen KJ, Boubert D, Gänsicke BT, Jha SW, Andrews JE, Chomiuk L, Foley RJ, Fraser M, Gromadzki M, Guillochon J, Kotze MM, Maguire K, Siebert MR, Smith N, Strader J, Badenes C, Kerzendorf WE, Koester D, Kromer M, Miles B, Pakmor R, Schwab J, Toloza O, Toonen S, Townsley DM, Williams BJ (2018). Three Hypervelocity White Dwarfs in Gaia DR2: Evidence for Dynamically Driven Double-degenerate Double-detonation Type Ia Supernovae, ApJ 865(1):15 407
• Sadiq SK, Mirambeau G, Meyerhans A (2018). Equilibrium model of drug-modulated GagPol-embedded HIV-1 reverse transcriptase dimerization to enhance premature protease activation, AIDS Research and Human Retroviruses 34(9):804-807 389
• Kozyreva A, Kromer M, Noebauer UM, Hirschi R (2018). OGLE14-073 – a promising pair-instability supernova candidate, Monthly Notices of the Royal Astronomical Society 479(3):3106-3114 416
• Cooper D, Danciger J, Wienhard A (2018). Limits of Geometries, Trans. Amer. Math. Soc. 370(9):6585-6627 891
• Higl J, Siess L, Weiss A, Ritter H (2018). An analysis of the TZ Fornacis binary system, A&A 617:A36 1250
• Guichard O, Wienhard A (2018). Positivity and higher Teichmüller theory, European Congress of Mathematics,pp.289-310,European Mathematical Society Publishing House 889
• Öztürk MA, Cojocaru V, Wade RC (2018). Toward an Ensemble View of Chromatosome Structure: A Paradigm Shift from One to Many, Structure 26(8):1050-1057 384
• Burelle J, Treib N (2018). Schottky groups and maximal representations, Geom Dedicata 195(1):215-239 993
• Disarlo V, Parlier H (2018). Simultaneous ips on triangulated surfaces, Michigan Math. J. 67(3):451-464 1002
• Liu Z, Tauris TM, Röpke FK, Moriya TJ, Kruckow M, Stancliffe RJ, Izzard RG (2018). The interaction of core-collapse supernova ejecta with a stellar companion, Proc. IAU 14(S346):55-58 1064
• Douglas RG, Nandekar P, Aktories J, Kumar H, Weber R, Sattler JM, Singer M, Lepper S, Sadiq SK, Wade RC, Frischknecht F (2018). Inter-subunit interactions drive divergent dynamics in mammalian and textitPlasmodium actin filaments, PLoS Biol 16(7):e2005345 390
• Wagner J (2018). Generalised model-independent characterisation of strong gravitational lenses. III. Perturbed axisymmetric lenses, A&A 615:A102 316
• Maat JR, Gianniotis N, Protopapas P (2018). Efficient Optimization of Echo State Networks for Time Series Datasets, 2018 International Joint Conference on Neural Networks (IJCNN),pp.1-7,IEEE 475
• Foerster JM, Poehner I, Ullmann GM (2018). MCMap – A Computational Tool for Mapping Energy Landscapes of Transient Protein-Protein Interactions, ACS Omega 3(6):6465-6475 381
• Heroven C, Georgi V, Ganotra GK, Brennan P, Wolfreys F, Wade RC, Fernández-Montalván AE, Chaikuad A, Knapp S (2018). Halogen–Aromatic pi Interactions Modulate Inhibitor Residence Times, Angew. Chem. Int. Ed. 57(24):7220-7224 387
• Heroven C, Georgi V, Ganotra GK, Brennan P, Wolfreys F, Wade RC, Fernández-Montalván AE, Chaikuad A, Knapp S (2018). Halogenaromatische pi-Wechselwirkungen modulieren die Verweilzeit von Inhibitoren, Angew. Chem. 130(24):7338-7343 388
• Sultan CS, Saackel A, Stank A, Fleming T, Fedorova M, Hoffmann R, Wade RC, Hecker M, Wagner AH (2018). Impact of carbonylation on glutathione peroxidase-1 activity in human hyperglycemic endothelial cells, Redox Biology 16:113-122 392
• Hou Y, Markert K, Strube M (2018). Unrestricted bridging resolution, Computational Linguistics 44(2):237-284 395
• Röpke FK, Sim SA (2018). Models for Type Ia Supernovae and Related Astrophysical Transients, Space Sci Rev 214(4) 415
• Swainston N, Baici A, Bakker BM, Cornish‐Bowden A, Fitzpatrick PF, Halling P, Leyh TS, O'Donovan C, Raushel FM, Reschel U, Rohwer JM, Schnell S, Schomburg D, Tipton KF, Tsai M, Westerhoff HV, Wittig U, Wohlgemuth R, Kettner C (2018). STRENDA DB: enabling the validation and sharing of enzyme kinetics data, FEBS J 285(12):2193-2204 912
• Kokh DB, Amaral M, Bomke J, Grädler U, Musil D, Buchstaller H, Dreyer MK, Frech M, Lowinski M, Vallee F, Bianciotto M, Rak A, Wade RC (2018). Estimation of Drug-Target Residence Times by τ-Random Acceleration Molecular Dynamics Simulations, J. Chem. Theory Comput. 14(7):3859-3869 382
• Wagner J, Tessore N (2018). Generalised model-independent characterisation of strong gravitational lenses. II. Transformation matrix between multiple images, A&A 613:A6 317
• Öztürk MA, Cojocaru V, Wade RC (2018). Dependence of Chromatosome Structure on Linker Histone Sequence and Posttranslational Modification, Biophysical Journal 114(10):2363-2375 383
• Panov IV, Glazyrin SI, Röpke FK, Blinnikov SI (2018). Nucleosynthesis during a Thermonuclear Supernova Explosion, Astron. Lett. 44(5):309-314 412
• Schreiber F, Bader GD, Gleeson P, Golebiewski M, Hucka M, Keating SM, Novère NL, Myers C, Nickerson D, Sommer B, Waltemath D (2018). Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017, Journal of Integrative Bioinformatics 15(1) 913
• Gryn’ova G, Corminboeuf C (2018). Noncovalent Molecular Electronics, J. Phys. Chem. Lett. 9(9):2298-2304 494
• Wagner J, Liesenborgs J, Tessore N (2018). Model-independent and model-based local lensing properties of CL0024+1654 from multiply imaged galaxies, A&A 612:A17 318
• Bruce NJ, Ganotra GK, Kokh DB, Sadiq SK, Wade RC (2018). New approaches for computing ligand–receptor binding kinetics, Current Opinion in Structural Biology 49:1-10 386
• García-Prada O, Peón-Nieto A, Ramanan S (2018). Higgs bundles for real groups and the Hitchin-Kostant-Rallis section, Trans. Amer. Math. Soc. 370(4):2907-2953 945
• Ghosh S (2018). The pressure metric on the Margulis multiverse, Geom Dedicata 193(1):1-30 999
• Choi S, Lee G, Marquis L (2018). Convex projective generalized Dehn filling, to appear in Ann. Sci. Éc. Norm. Supér. 981
• Bozzola G, Stergioulas N, Bauswein A (2018). Universal relations for differentially rotating relativistic stars at the threshold to collapse, Monthly Notices of the Royal Astronomical Society 474(3):3557-3564 413
• Gall EEE, Kotak R, Leibundgut B, Taubenberger S, Hillebrandt W, Kromer M, Burgett WS, Chambers K, Flewelling H, Huber ME, Kaiser N, Kudritzki RP, Magnier EA, Metcalfe N, Smith K, Tonry JL, Wainscoat RJ, Waters C (2018). An updated Type II supernova Hubble diagram, A&A 611:A25 414
• Imber M, Huyen NTT, Pietrzyk-Brzezinska AJ, Loi VV, Hillion M, Bernhardt J, Thärichen L, Kolšek K, Saleh M, Hamilton CJ, Adrian L, Gräter F, Wahl MC, Antelmann H (2018). Protein S-Bacillithiolation Functions in Thiol Protection and Redox Regulation of the Glyceraldehyde-3-Phosphate Dehydrogenase Gap in Staphylococcus aureus Under Hypochlorite Stress., Antioxid Redox Signal 20;28(6):410-430 1122
• Hillebrandt W, Bulla M, Kromer M, Pakmor R, Röpke FK, Schrauth M, Sim SA (2018). The Progenitor Systems of Thermonuclear Supernovae, In NIC Symposium 2018, vol. 49 of NIC Series, pp. 99 - 106, Forschungszentrum Jülich GmbH, Zentralbibliothek, Jülich 410
• Röpke FK, Berberich J, Edelmann PFV, Horst L, Jones SW, Michel A, Poala AB (2018). Towards Multidimensional Hydrodynamic Simulations of Stars, In NIC Symposium 2018, vol. 49 of NIC Series, pp. 115 - 122, Forschungszentrum Jülich GmbH, Zentralbibliothek, Jülich 411
• Wienhard A, Zhang T (2018). Deforming convex real projective structures, Geom Dedicata 192(1):327-360 890
• Cahn P, Fanoni F, Petri B (2018). Mapping class group orbits of curves with self-intersections, Isr. J. Math. 223(1):53-74 933
• SANDERS A (2018). Entropy, minimal surfaces and negatively curved manifolds, Ergod. Th. Dynam. Sys. 38(1):336-370 959
• Ritter C, Andrassy R, Côté B, Herwig F, Woodward PR, Pignatari M, Jones S (2018). Convective–reactive nucleosynthesis of K, Sc, Cl and p-process isotopes in O–C shell mergers, Monthly Notices of the Royal Astronomical Society: Letters 474(1):L1-L6 1485
• Wittig U, Rey M, Weidemann A, Kania R, Müller W (2018). SABIO-RK: an updated resource for manually curated biochemical reaction kinetics, Nucleic Acids Research 46(D1):D656-D660 911
• Passam F, Chiu J, Ju L, Pijning A, Jahan Z, Mor-Cohen R, Yeheskel A, Kolšek K, Thärichen L, Aponte-Santamaría C, Gräter F, Hogg PJ (2018). Mechano-redox control of integrin de-adhesion, eLife, vol. 7 376
• Putzu M, Gräter F, Elstner M, Kubař T (2018). On the mechanism of spontaneous thiol-disulfide exchange in proteins, Physical Chemistry Chemical Physic: PCCP, 20(23):16222–16230 377
• Ray A, Gräter F, Thukral L (2018). Probing molecular forces in multi-component physiological membranes, Physical Chemistry Chemical Physic: PCCP, 20(4):2155–2161 378
• Tan PS, Aramburu IV, Mercadante D, Tyagi S, Chowdhury A, Spitz D, Shammas SL, Gräter F, Lemke EA (2018). Two Differential Binding Mechanisms of FG-Nucleoporins and Nuclear Transport Receptors, Cell Reports, 22(13):3660–3671 379
• Bannister A, Müller FG, Müller M, Teschke O (2018). On the road to MSC 2020 (Editorial), Newsletter of the European Mathematical Society(108), pp. 3-4 393
• Heinzerling B, Strube M (2018). BPEmb: Tokenization-free pre-trained subword embeddings in 275 languages, In Proceedings of the 11th International Conference on Language Resources and Evaluation, Miyazaki, Japan, 7–12 May 2018 394
• Kirilin A, Strube M (2018). Exploiting a speaker’s credibility to detect fake news, In Workshop on Data Science, Journalism and Media, London, UK, 20 August 2018 396
• Mesgar M, Strube M (2018). A neural local coherence model for text quality assessment, In Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, 31 October – 4 November 2018, pp. 4328-4339 397
• Mohseni M, Faili H (2018). Title generation and keyphrase extraction from Persian scientific texts, In Proceedings of the 9th International Symposium on Telecommunications, Tehran, Iran, 17-19 December 398
• Müller M (2018). On the contribution of word-level semantics to practical author name disambiguation, In Proceedings of the 18th ACM/IEEE Joint Conference on Digitial Libraries, Fort Worth, Texas, 3–7 June 2018, pp. 367-368 399
• Müller M, Strube M (2018). Transparent, efficient, and robust word embedding access with WOMBAT, In Proceedings of the 27th International Conference on Computational Linguistics: System Demonstrations, Santa Fé, New Mexico, 20–26 August 2018, pp. 53-57 400
• Moosavi NS, Strube M (2018). Using linguistic features to improve generalization in neural coreference resolvers, In Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, 31 October – 4 November 2018, pp. 193-203 401
• Sekulić I, Gjurković M, Šnajder J (2018). Not just depressed: Bipolar disorder prediction on Reddit, In Proceedings of the 9th Workshop on Computational Approaches to Subjectivity and Social Media Analysis, Brussels, Belgium, 31 October 2018, pp. 72-78 402
• Suter J, Strube M (2018). Extending and exploiting the entity graph for analysis, classification and visualization of German texts, In Proceedings of the 14th Conference on Natural Language Processing (KONVENS), Vienna, Austria, 17–19 September 2018, pp. 136-140 403
• Zopf M, Botschen T, Falke T, Heinzerling B, Marasovic A, Mihaylov T, P.V.S. A, Mencía EL, Fürnkranz J, Frank A (2018). What’s important in a text? An extensive evaluation of linguistic annotations for summarization, In Proceedings of the 5th International Conference on Social Networks Analysis, Management and Security, Valencia, Spain, 15–18 October 2018, pp. 272-277 404
• Alfano M, Hovy D, Mitchell M, Strube M (2018). Proceedings of the 2nd ACL Workshop on Ethics in Natural Language Processing, New Orleans, Louis., 5 June 2018, http://aclweb.org/anthology/W18-0800.pdf 406
• Gryn’ova G, Corminboeuf C (2018). Steric “Attraction”: Not by Dispersion Alone, Beilstein J. Org. Chem. 14:1482-1490 495
• Vaillant FL, Garreau M, Nicolai S, Gryn'ova G, Corminboeuf C, Waser J (2018). Fine-Tuned Organic Photoredox Catalysts for Fragmentation-Alkynylation Cascades of Cyclic Oxime Ethers, Chem. Sci. 9(27):5883-5889 496
• Sadiq SK, Wade RC (2018). Computing Protein-Ligand Binding Association Rate Constants by Combining Brownian Dynamics and Molecular Dynamics Simulations, Biophysical Journal 114 (3), 56a 729
• Friedrich P (2018). A novel method to treat gated protein-ligand binding via on-the-fly conformational updates within rigid body BD simulations (Master's Thesis), Faculty of Physics, Ruprecht-Karls University Heidelberg, 2018, Rebecca C. Wade, S. Kashif Sadiq and Neil Bruce(HITS Tutor) 880
• Öztuerk MA (2018). A computational approach to decipher chromatosome structure determinants (Doctoral Thesis), Combined Faculties of the Natural Sciences and for Mathematics, Ruprecht-Karls University Heidelberg, Rebecca C. Wade (HITS Tutor) 882
• Durham MG, Fanoni F, Vlamis NG (2018). Graphs of curves on infinite-type surfaces with mapping class group actions, Annales de l'Institut Fourier 68(6):2581-2612 931
• Sanders A (2018). The pre-symplectic geometry of opers and the holonomy map, arXiv:1804.04716 [math.DG] 962
• Wienhard A (2018). An invitation to higher Teichmüller theory, Proc. Int. Cong. of Math. 2018, Rio de Janeiro 1:1007-1034 967
• Duchesne B, Lécureux J, Pozzetti MB (2018). Boundary maps and maximal representations on infinite dimensional Hermitian symmetric spaces, arXiv:1810.10208 [math.GR] 975
• Alessandrini D, Lee G, Schaffhauser F (2018). Hitchin components for orbifolds, arXiV:1811.05366 [math.GT] 977
• Stecker F, Treib N (2018). Domains of discontinuity in oriented flag manifolds, arXiv:1806.04459 [math.DG] 979
• Stecker F (2018). Balanced ideals and domains of discontinuity of Anosov representations, arXiv:1810.11496 [math.GT] 980
• Barbot T, Lee G, Valério VP (2018). Pappus Theorem, Schwartz Representations and Anosov Representations, Annales de l'Institut Fourier 68(6):2697-2741 983
• Ballas S, Danciger J, Lee G (2018). Convex projective structures on nonhyperbolic three-manifolds, Geom. Topol. 22(3):1593-1646 984
• Choi S, Lee G, Marquis L (2018). Deformations of convex real projective manifolds and orbifolds, In Handbook of group actions. Vol. III, vol. 40 of Adv. Lect. Math. (ALM), pp. 263–310, Int. Press, Somerville, MA 987
• Beyrer J (2018). A complete description of the antipodal set of most symmetric spaces of compact type, Osaka J. Math 55(3):567–586 988
• Beyrer J, Fioravanti E (2018). Cubulations and cross ratios on contracting boundaries, arXiv:1810.08087 [math.GT] 989
• Beyrer J, Fioravanti E, Incerti-Medici M (2018). CAT(0) cube complexes are determined by their boundary cross ratio, arXiv,math.GT,1805.08478 991
• Burelle J, Treib N (2018). Schottky presentations of positive representations, arXiv:1807.05286 [math.DG] (to published in Math. Ann.) 995
• Disarlo V, Randecker A, Tang R (2018). Rigidity of the saddle connection complex, arXiV:1810.00961 [math.GT] 1001
• Dohrke J (2018). Modelling of Neurotrophin Receptors (Bachelor's Thesis), Molecular Biotechnology, Faculty of Biosciences, Ruprecht-Karls University Heidelberg, 2018, Rebecca C. Wade and Goutam Mukherjee(HITS Tutor) 1032
• D’Isanto A, Polsterer KL (2018). Photometric redshift estimation via deep learning. Generalized and pre-classification-less, image based, fully probabilistic redshifts, A&A 609:A111 205
• Mexner W, Bonn M, Kopmann A, Mauch V, Ressmann D, Chilingaryan SA, Jerome NT, Kamp TVD, Heuveline V, Lösel P, al. e (2018). OpenGL® API-Based Analysis of Large Datasets in a Cloud Environment, Design and Use of Virtualization Technology in Cloud Computing,pp.161-181,IGI Global 242
• D’Isanto A, Cavuoti S, Gieseke F, Polsterer KL (2018). Return of the features – Efficient feature selection and interpretation for photometric redshifts, Astronomy & Astrophysics, 616:A97 315
• Rülicke L (2018). Design and Implementation of I/O-Efficient Taxa Quartets Counting in the Context of Phylogenetic Analysis (Master's Thesis), Computer Science, University of Frankfurt, 2018, Ulrich Meyer(Tutor), Alexandros Stamatakis(HITS Tutor) 319
• Giesse S (2018). Inferring Species Trees by Minimizing Quartet-based Uncertainty (Master's Thesis), Computer Science, Karlsruhe Institute of Technology, 2018, Alexandros Stamatakis(HITS Tutor) 320
• Kozlov A (2018). Models, Optimizations, and Tools for Large-Scale Phylogenetic Inference, Handling Sequence Uncertainty, and Taxonomic Validation (Doctoral Thesis), Computer Science, Karlsruhe Institute of Technology, 2018, Alexandros Stamatakis(HITS Tutor) 321
• Darriba D, Flouri T, Stamatakis A (2018). The state of software for evolutionary biology, Molecular Biology and Evolution, 35(5):1037–1046 322
• Hoang DT, Vinh LS, Flouri T, Stamatakis A, Häseler Av, Minh BQ (2018). MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation, BMC Evolutionary Biology, 18(1):11 323
• Psonis N, Antoniou A, Karameta E, Leaché AD, Kotsakiozi P, Darriba D, Kozlov A, Stamatakis A, Poursanidis D, Kukushkin O, others (2018). Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system, Molecular Phylogenetics and Evolution, 125:100–115 324
• Barbera P, Kozlov AM, Czech L, Morel B, Darriba D, Flouri T, Stamatakis A (2018). EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences, Systematic Biology 68(2):365-369 325
• Johnson KP, Dietrich CH, Friedrich F, Beutel RG, Wipfler B, Peters RS, Allen JM, Petersen M, Donath A, Walden KK, others (2018). Phylogenomics and the evolution of hemipteroid insects, Proceedings of the National Academy of Sciences, pp. advance online access 326
• Eiserhardt WL, Antonelli A, Bennett DJ, Botigué LR, Burleigh JG, Dodsworth S, Enquist BJ, Forest F, Kim JT, Kozlov AM, others (2018). A roadmap for global synthesis of the plant tree of life, American Journal of Botany, 105(3):614–622 327
• Bass D, Czech L, Williams BA, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA (2018). Clarifying the Relationships between Microsporidia and Cryptomycota, Journal of Eukaryotic Microbiology, pp. 773-782 328
• Pauli T, Burt TO, Meusemann K, Bayless K, Donath A, Podsiadlowski L, Mayer C, Kozlov A, Vasilikopoulos A, Liu S, others (2018). New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae), Systematic Entomology, 43(3):447–459 329
• Sann M, Niehuis O, Peters RS, Mayer C, Kozlov A, Podsiadlowski L, Bank S, Meusemann K, Misof B, Bleidorn C, others (2018). Phylogenomic analysis of Apoidea sheds new light on the sister group of bees, BMC Evolutionary Biology, vol. 18(1), p. 71 330
• Peters RS, Niehuis O, Gunkel S, Bläser M, Mayer C, Podsiadlowski L, Kozlov A, Donath A, Noort Sv, Liu S, others (2018). Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success, Molecular Phylogenetics and Evolution, 120:286–296 331
• Czech L, Stamatakis A (2018). Methods for Automatic Reference Trees and Multilevel Phylogenetic Placement, Bioinformatics, pp. advance online access 332
• Czech L, Stamatakis A (2018). Scalable Methods for Post-Processing, Visualizing, and Analyzing Phylogenetic Placements, bioRxiv, p. 346353 333
• Morel B, Kozlov AM, Stamatakis A (2018). ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes., Bioinformatics 35(10):1771-1773 334
• Stamatakis A (2018). Population and Evolutionary Genetic Inferences in the Whole-Genome Era: Software Challenges, In Population Genomics, Springer 335
• Trefzer A, Stamatakis A (2018). Compressing Streams of Phylogenetic Trees, bioRxiv, p. 440644 336
• Kozlov A, Darriba D, Flouri T, Morel B, Stamatakis A (2018). RAxML-NG: A fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference, bioRxiv, p. 447110 337
• Arnault J, Rummler T, Baur F, Lerch S, Wagner S, Fersch B, Zhang Z, Kerandi N, Keil C, Kunstmann H (2018). Precipitation sensitivity to the uncertainty of terrestrial water flow in WRF-Hydro: An ensemble analysis for Central Europe, Journal of Hydrometeorology, 19(6):1007–1025 338
• Baran S, Lerch S (2018). Combining predictive distributions for the statistical post-processing of ensemble forecasts, International Journal of Forecasting, 34(3):477–496 339
• Ehm W, Krüger F (2018). Forecast dominance testing via sign randomization, Electronic Journal of Statistics, 12(2):3758–3793 340
• Gneiting T, Asher J, Carriquiry A, Davis R, Dawid AP, Efron B, Haberman S, Kou S, Newton M, Paddock S, Prewitt K, Raftery A, Stein M, Straf M (2018). Special section in memory of Stephen E. Fienberg (1942–2016) AOAS Editor-in-Chief 2013–2015, Annals of Applied Statistics, 12(2):iii–x 341
• Pantillon F, Lerch S, Knippertz P, Corsmeier U (2018). Forecasting wind gusts in winter storms using a calibrated convection‐permitting ensemble, Quarterly Journal of the Royal Meteorological Society, 144(715):1864–1881 342
• Rasp S, Lerch S (2018). Neural networks for postprocessing ensemble weather forecasts, Monthly Weather Review, 146(11):3885–3900 343
• Vogel P, Knippertz P, Fink AH, Schlueter A, Gneiting T (2018). Skill of global raw and postprocessed ensemble predictions of rainfall over northern tropical Africa, Weather and Forecasting, 33(2):369–388 344
• Song C (2018). Uncertainty quantification for a blood pump device with generalized polynomial chaos expansion (Doctoral Thesis), Ruprecht-Karls-Universität Heidelberg 2018, 2018, Vincent Heuveline(Tutor) 345
• Kratzke J (2018). Uncertainty quantification for fluid-structure interaction, application to aortic biomechanics (Doctoral Thesis), Ruprecht-Karls-Universität Heidelberg 2018, 2018, Vincent Heuveline(Tutor) 347
• Seelig T, Meyer A, Gerstner P, Meier M, Jongmanns M, Baumann M, Heuveline V, Egbers C (2018). Dielectrophoretic force-driven convection in annular geometry under Earth’s gravity, arXiv preprint arXiv:1812.05460 348
• Mexner W, Bonn M, Kopmann A, Mauch V, Ressmann D, Chilingaryan SA, Jerome NT, Kamp Tvd, Heuveline V, Lösel P (2018). OpenGL@API-Based Analysis of Large Datasets in a Cloud Environment, In Design and Use of Virtualization Technology in Cloud Computing, pp. 161–181, IGI Global 349
• Gawlok S, Heuveline V (2018). Nested Schur-Complement Solver for a Low-Mach Number Model: Application to a Cyclone-Cyclone Interaction, Preprint Series of the Engineering Mathematics and Computing Lab, vol. 0(02) 350
• John D, Schick M, Heuveline V (2018). Learning model discrepancy of an electric motor with Bayesian inference, Preprint Series of the Engineering Mathematics and Computing Lab, vol. 0(01) 351
• John D, Schick M, Heuveline V (2018). Bayesian inference for estimating model discrepancy of an electric motor, PAMM, 18(1):1–2 352
• Ji L, Schilling A (2018). Toric Varieties vs. Horofunction Compactifications of Polyhedral Norms, L’Enseignement Mathèmatique, 63:375–401 370
• Butera D, Passam F, Ju L, Cook KM, Woon H, Aponte-Santamaría C, Gardiner E, Davis AK, Murphy DA, Bronowska A, Luken BM, Baldauf C, Jackson S, Andrews R, Gräter F, Hogg PJ (2018). Autoregulation of von Willebrand factor function by a disulfide bond switch, Science Advances, 4(2):eaaq1477 372
• Franz F, Aponte-Santamaría C, Daday C, Miletić V, Gräter F (2018). Stability of Biological Membranes upon Mechanical Indentation, The Journal of Physical Chemistry. B, 122(28):7073–7079 373
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