A strapped down checkpointable RAxML version for computing huge trees on supercomputers. Development of this code has stopped, please use …

A fast and simple open-source parsimony program for building phylogenies on DNA data.Hybrid MrBayes Parallelized Bayesian tree inference for large-scale …

Parallelized Bayesian tree inference for large-scale datasets.

New, flexible low level phylogenetic likelihood library.

The all new, from scratch re-design of RAxML: better, faster, more scalable, easier to use.

The all new faster ModelTest, superseding jModelTest and ProtTest.

Second version of libpll, including site repeats optimization.

A simple graphical tree comparison tool that visualizes differences between up to four different trees by highlighting the branches (bipartitions/splits) …

Old Tree visualization tool using treemaps and taxonomic information.

Highly optimized versions of Pierre Legendre’s Parafit and DistPCoA programs for statistical analysis of host-parasite coevolution.